BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0588600 Os03g0588600|AK109508
(670 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0588600 Frigida-like family protein 860 0.0
Os03g0588200 Frigida-like family protein 177 3e-44
Os09g0248200 Frigida-like family protein 71 2e-12
Os09g0248300 Frigida-like family protein 67 3e-11
>Os03g0588600 Frigida-like family protein
Length = 670
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/670 (67%), Positives = 455/670 (67%)
Query: 1 MVVSDSXXXXXXXXXXXXXXXXXXXXXGTTMGXXXXXXXXXXXXXXXXXXXFDCLVACSP 60
MVVSDS GTTMG FDCLVACSP
Sbjct: 1 MVVSDSPKPQPTPSPPAPPPLPVPAAAGTTMGELEAAIEALAAKKLRLREAFDCLVACSP 60
Query: 61 IPIPFRWDDIDAHVSSIQSSVAGRFRQFQXXXXXXXXXXXXXXXXSNAXXXXXXXXXXXX 120
IPIPFRWDDIDAHVSSIQSSVAGRFRQFQ SNA
Sbjct: 61 IPIPFRWDDIDAHVSSIQSSVAGRFRQFQALQTAATAGITAAPATSNASSRVERSVEHLV 120
Query: 121 XXXXGQESHVARHXXXXXXXXXXXXXXXXXXXVAMDVESEEENGMVVEVASEAPRGEDGE 180
GQESHVARH VAMDVESEEENGMVVEVASEAPRGEDGE
Sbjct: 121 VVVEGQESHVARHEDGGNGEGEGEGEGGLGKEVAMDVESEEENGMVVEVASEAPRGEDGE 180
Query: 181 VEEDEKMGGPINASPPSEEIHGKGADMSRRWGNPMEMSADVDDXXXXXXXXXXXXXXXXX 240
VEEDEKMGGPINASPPSEEIHGKGADMSRRWGNPMEMSADVDD
Sbjct: 181 VEEDEKMGGPINASPPSEEIHGKGADMSRRWGNPMEMSADVDDAKTKTTATAAAAELTAM 240
Query: 241 XISPIPGFTGRGGXXXXXXXXXXXXXXXMDXXXXXXXXXXXXXXXXXXXXXXXRHFXXXX 300
ISPIPGFTGRGG MD RHF
Sbjct: 241 AISPIPGFTGRGGAEASLRRSLAAACASMDSSSLARILCSSGSSSSSHATLAARHFRPAL 300
Query: 301 XXXXXXXXXXXXXXXDLLAGTAPIRDSAWESCVELLSCVPKLAVAPSPGTMEQANRLAED 360
DLLAGTAPIRDSAWESCVELLSCVPKLAVAPSPGTMEQANRLAED
Sbjct: 301 LAAAEPAALVVRAVRDLLAGTAPIRDSAWESCVELLSCVPKLAVAPSPGTMEQANRLAED 360
Query: 361 WKEMIGRTESCSMNLGRLAVWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLC 420
WKEMIGRTESCSMNLGRLAVWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLC
Sbjct: 361 WKEMIGRTESCSMNLGRLAVWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLC 420
Query: 421 KYLGLIDKMADSVGHLIEHGQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILS 480
KYLGLIDKMADSVGHLIEHGQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILS
Sbjct: 421 KYLGLIDKMADSVGHLIEHGQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILS 480
Query: 481 MESDSESLKLSMSKQVNALILSWRVVGECNIDSVHCDRIKAEITQLLHKYANKRHSLEEL 540
MESDSESLKLSMSKQVNALILSWRVVGECNIDSVHCDRIKAEITQLLHKYANKRHSLEEL
Sbjct: 481 MESDSESLKLSMSKQVNALILSWRVVGECNIDSVHCDRIKAEITQLLHKYANKRHSLEEL 540
Query: 541 PSDTSSPHQKHHQMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRMQXXXXXXXXXXXXX 600
PSDTSSPHQKHHQMS RRMQ
Sbjct: 541 PSDTSSPHQKHHQMSQEKHHWQQKHREEQQQQFQNQSKEQEQERRMQKLRELRKKKNKRT 600
Query: 601 XXXXXXXXAQVMKQHQFEKQRKLYHAGSFTNSQSYVRSEIHHHLSQHFSGTIGTPVAPYT 660
AQVMKQHQFEKQRKLYHAGSFTNSQSYVRSEIHHHLSQHFSGTIGTPVAPYT
Sbjct: 601 QRRKRKQNAQVMKQHQFEKQRKLYHAGSFTNSQSYVRSEIHHHLSQHFSGTIGTPVAPYT 660
Query: 661 PVAPYTGPFW 670
PVAPYTGPFW
Sbjct: 661 PVAPYTGPFW 670
>Os03g0588200 Frigida-like family protein
Length = 798
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 144/219 (65%), Gaps = 2/219 (0%)
Query: 329 WESCVELLSCVPKLAVAPSPGTMEQANRLAEDWKEMIGRTESCSMNLGRLAVWGLLNFLV 388
W +CV L+ C+P + + S TM+QA +LA+DWKEMI T S S ++ L+ WGLL FL+
Sbjct: 363 WGNCVGLIRCLPAVNASLSSDTMKQAKQLAKDWKEMIDSTGS-SRDVLNLSSWGLLYFLI 421
Query: 389 SYNIVLEFDAEEIIHFFGTLP-DDKKQCCISLCKYLGLIDKMADSVGHLIEHGQQLVAIR 447
SYNIV EF +EI FGTL +K+ CI LCK LGL++++ D + +LI +GQQL A+
Sbjct: 422 SYNIVSEFSVDEIFCIFGTLSRKQQKKNCIELCKGLGLVNRITDLIDYLIGNGQQLEALL 481
Query: 448 LACTLNLTDKYTPLSIMEDYIQNAKETAQEILSMESDSESLKLSMSKQVNALILSWRVVG 507
L NL DKYTPLS+++ Y++ AK+ A +I++M S +SL ++K+V++L+++ +V
Sbjct: 482 LTQAFNLIDKYTPLSLLKGYVERAKQNALDIINMNSPRKSLSPLITKEVDSLMVAQNIVQ 541
Query: 508 ECNIDSVHCDRIKAEITQLLHKYANKRHSLEELPSDTSS 546
+ D + AE+ +LL +YA KR S + + TS+
Sbjct: 542 QQITDFNVRSGMLAEMKKLLDQYATKRSSGDACSASTSN 580
>Os09g0248200 Frigida-like family protein
Length = 540
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 109/235 (46%), Gaps = 25/235 (10%)
Query: 331 SCVELLSCVPKLAVAPSPGTM-----------EQANRLAEDWKEMIGRTESCSMNLGRLA 379
+C+ L+ + +L + G + E+A ++A +WK + + + N L
Sbjct: 243 TCLMLMESLAQLQTDATTGFISEGQVLTASIKERAKKIALEWKSKLDSLDFDASNGNCLE 302
Query: 380 VWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLCKYLGLIDKMADSVGHLIEH 439
L L ++ I EF +E+ ++ +++ LC+ LGL M +G L+E+
Sbjct: 303 AHAFLQLLATFGIFAEFAQDELCKLLPSV--SRRRQTPELCRILGLSQNMPGVIGVLVEN 360
Query: 440 GQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAK-----ETAQEILSMESDSESLKLSMSK 494
G+ + AI LA LT+++ P+ +++ Y+Q K +T + L ++++ +LS
Sbjct: 361 GRTIDAINLAYAFELTNQFEPVELLKAYLQEVKSVPHFKTGKISLQVQNEMNERELS--- 417
Query: 495 QVNALILSWRVVGECNIDSVH-CDRIKAEITQLLHKYANKRHSLEELPSDTSSPH 548
AL + + + E +D + D ++ + QL A+KR ++E + P
Sbjct: 418 ---ALKAAIKCIEEHKLDEKYPIDLLQKRVIQLEKAKADKRRAVEAAKPQSKRPR 469
>Os09g0248300 Frigida-like family protein
Length = 542
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 104/220 (47%), Gaps = 15/220 (6%)
Query: 331 SCVELLSCVPKLAVAPSPGTM-----------EQANRLAEDWKEMIGRTESCSMNLGRLA 379
+C+ L+ + +L + G + E+A ++A +WK + + + N L
Sbjct: 239 TCLMLMESLAQLQTDATTGFISKGQMLTASIKERAKKIALEWKSKLDSLDFDASNGNCLE 298
Query: 380 VWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLCKYLGLIDKMADSVGHLIEH 439
L L ++ I EF +E+ ++ +++ LC+ LGL M +G LIE+
Sbjct: 299 AHAFLQLLATFAIFSEFAEDELCKLLPSV--SRRRQTPELCRILGLSQNMPGVIGVLIEN 356
Query: 440 GQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILSMESDSESLKLSMSKQVNAL 499
G+ + AI LA LTD++ P+ +++ Y++ K + S +++ ++++AL
Sbjct: 357 GRTIDAINLAYAFELTDQFEPVELLKAYLKEVKSMSHVKTGKMSPGVQNEIN-ERELSAL 415
Query: 500 ILSWRVVGECNIDSVH-CDRIKAEITQLLHKYANKRHSLE 538
+ + E +D + D ++ + QL A+KR ++E
Sbjct: 416 KAVIKCIEEHKLDEKYPIDPLQRRVIQLEKAKADKRRAVE 455
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,647,099
Number of extensions: 552681
Number of successful extensions: 1830
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1826
Number of HSP's successfully gapped: 4
Length of query: 670
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 563
Effective length of database: 11,448,903
Effective search space: 6445732389
Effective search space used: 6445732389
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)