BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0565200 Os03g0565200|AK065884
(320 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0565200 Haloacid dehalogenase-like hydrolase domain co... 514 e-146
Os08g0485900 Haloacid dehalogenase-like hydrolase domain co... 171 7e-43
Os12g0630700 Similar to NONA protein 86 3e-17
Os10g0464400 Haloacid dehalogenase/epoxide hydrolase family... 80 3e-15
>Os03g0565200 Haloacid dehalogenase-like hydrolase domain containing protein
Length = 320
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 261/306 (85%), Positives = 261/306 (85%)
Query: 15 GTFSTARPVAGRPAGQRLXXXXXXXXXXXXXXXXXXCLSXXXXXXXXXXXXXXXXXXXXX 74
GTFSTARPVAGRPAGQRL CLS
Sbjct: 15 GTFSTARPVAGRPAGQRLPTRVAAASRTTTARSPAACLSVGGRRRGAEAVRASAGGAPAA 74
Query: 75 XXXXXXLFDCDGVLVDTEKDGHRISFNETFAERELGVSWDVELYGELLKIGGGKERMTAY 134
LFDCDGVLVDTEKDGHRISFNETFAERELGVSWDVELYGELLKIGGGKERMTAY
Sbjct: 75 SLPAALLFDCDGVLVDTEKDGHRISFNETFAERELGVSWDVELYGELLKIGGGKERMTAY 134
Query: 135 FSKMGWPAKAPKTDDERKEFIASLHKRKTELFMALIEKKLLPLRPGVQRLIDEALGKGVK 194
FSKMGWPAKAPKTDDERKEFIASLHKRKTELFMALIEKKLLPLRPGVQRLIDEALGKGVK
Sbjct: 135 FSKMGWPAKAPKTDDERKEFIASLHKRKTELFMALIEKKLLPLRPGVQRLIDEALGKGVK 194
Query: 195 VAVCSTSNEKAVSAIVSCLLGPDRAEKITIFAGDVVPRKKPDPAIYLLAATTLGVDPSSC 254
VAVCSTSNEKAVSAIVSCLLGPDRAEKITIFAGDVVPRKKPDPAIYLLAATTLGVDPSSC
Sbjct: 195 VAVCSTSNEKAVSAIVSCLLGPDRAEKITIFAGDVVPRKKPDPAIYLLAATTLGVDPSSC 254
Query: 255 VVVEDSTIGLAAAKAAGMKCIVTKSGYTAEEDFATADAVFDCIGDPPEVRFDLEFCANLL 314
VVVEDSTIGLAAAKAAGMKCIVTKSGYTAEEDFATADAVFDCIGDPPEVRFDLEFCANLL
Sbjct: 255 VVVEDSTIGLAAAKAAGMKCIVTKSGYTAEEDFATADAVFDCIGDPPEVRFDLEFCANLL 314
Query: 315 QKQFVS 320
QKQFVS
Sbjct: 315 QKQFVS 320
>Os08g0485900 Haloacid dehalogenase-like hydrolase domain containing protein
Length = 324
Score = 171 bits (433), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 147/261 (56%), Gaps = 29/261 (11%)
Query: 81 LFDCDGVLVDTEKDGHRISFNETFAERELGVS--------------WDVELYGELL-KIG 125
+FDCDGV++++E HR ++N+ FA GVS WD Y +L +IG
Sbjct: 71 IFDCDGVILESEH-LHRQAYNDAFAH--FGVSCEPASAAATDAPLYWDEAFYDDLQNRIG 127
Query: 126 GGKERMTAYFSKMGWPAK-----APKTDDERKEFIASLHKRKTELFMALIEKKLLPLRPG 180
GGK +M YF + GWP P +D ++++ + + KTE + +++ + RPG
Sbjct: 128 GGKPKMRWYFGENGWPTSKIFETPPSSDSDKEKLVDIIQDWKTERYKEILKSGTVKPRPG 187
Query: 181 VQRLIDEALGKGVKVAVCSTSNEKAVSAIVSCLLGPDRAEKITIF-AGDVVPRKKPDPAI 239
V RL+DE G G+K+AVCS + + +V + L+G +R + F AGD V KKPDP+I
Sbjct: 188 VLRLMDEVKGAGIKLAVCSAATKSSVIMCLENLIGLERFNGLDCFLAGDDVKLKKPDPSI 247
Query: 240 YLLAATTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSGYTAEEDFATADAVFDCIGD 299
Y+ AA LGV +C+VVEDS IGL AAK AGM CI+T + TA +DF+ A A +
Sbjct: 248 YITAAEKLGVQSQNCLVVEDSVIGLQAAKGAGMSCIITYTPSTANQDFSDAIATY----- 302
Query: 300 PPEVRFDLEFCANLLQKQFVS 320
P LE LLQK V+
Sbjct: 303 PDLSNVGLEDLKLLLQKSLVT 323
>Os12g0630700 Similar to NONA protein
Length = 371
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 11/159 (6%)
Query: 81 LFDCDGVLVDTEKDGHRISFNETFAERELGV---SWDVELYGELL-KIGGGKERMTA-YF 135
L + +GVL D + G+R +FN F + LG+ +W +Y +L+ K G +ERM +F
Sbjct: 81 LLEVEGVLADVYRFGNRQAFNVAF--QNLGLDCANWTEPIYADLVRKASGDEERMLLLFF 138
Query: 136 SKMGWPAKAPKTDDERKEFIASLHKRKTELFMALIEKKLLPLRPGVQRLIDEALGKGVKV 195
+++GWP P +E++ F+ S+ + K + LPLRPGV++ ID+AL +GV V
Sbjct: 139 NRIGWPTSLP--TNEKESFMKSVLREKLKALEVFSASDSLPLRPGVEQFIDDALNEGVPV 196
Query: 196 AVCST--SNEKAVSAIVSCLLGPDRAEKITIFAGDVVPR 232
A+ +T N + S + LG +R KI I + V R
Sbjct: 197 AILTTYGRNGEKTSRYIIEKLGQERTSKIHIVGKEEVER 235
>Os10g0464400 Haloacid dehalogenase/epoxide hydrolase family protein
Length = 397
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 179 PGVQRLIDEALGKGVKVAVCSTSNEKAVSAIVSCLLGPDRAEKITIFAGDVVPRKKPDPA 238
PG RLI GV A+ S S + A +SC G + I GD V + KP P
Sbjct: 96 PGANRLIKHLKSNGVPAALASNSPRSNIDAKISCHQGWKESFS-AIVGGDEVEKGKPSPD 154
Query: 239 IYLLAATTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSGYTAEEDFATADAVFDCIG 298
I+L AA + +P +C+V+EDS G+AA KAAGM I S +F++AD V + +
Sbjct: 155 IFLEAAKRMNTNPPNCLVIEDSLPGVAAGKAAGMHVIAVPSVPKRTAEFSSADEVINSLL 214
Query: 299 D 299
D
Sbjct: 215 D 215
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,306,550
Number of extensions: 360973
Number of successful extensions: 870
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 4
Length of query: 320
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 219
Effective length of database: 11,762,187
Effective search space: 2575918953
Effective search space used: 2575918953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)