FiT-DB / Search/ Help/ Sample detail

Os12g0630700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NONA protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0132) R2 : 0.708
β1 : -1.09 (0.0484) R2dD : 0.339 R2D : 0.0231
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.797 (0.0282) R2dN8 : 0.685 R2N8 : 0.369
σ : 0.248
deviance : 28.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.57 0.213 12.9 -0.744 0.289 -0.154 0.432 1.72 -0.693 8.42 20.41 484 -- --
22.21 0.219 12.9 -1.03 0.318 -0.135 0.134 -- -0.755 8.44 14.51 10265 -- --
20.87 0.213 12.9 -0.808 0.304 -0.127 -- 1.46 -0.717 8.57 20.5 264 -- --
22.24 0.22 12.9 -1.02 0.318 -0.135 -- -- -0.756 8.19 14.41 9846 -- --
24.15 0.229 12.9 -0.688 -- -0.42 -- 1.91 -0.646 -- 22.55 505 -- --
22.51 0.222 13 -1.1 0.318 -- 0.128 -- -0.801 8.35 -- -- -- --
22.56 0.222 13 -1.1 0.319 -- -- -- -0.801 8.29 -- -- -- --
25.47 0.235 13 -1.04 -- -0.305 -- -- -0.784 -- 25.7 575 -- --
31.97 0.263 12.9 -- 0.313 -0.759 -- -- -0.452 8.16 7.087 47520 -- --
28.19 0.248 13 -1.09 -- -- -- -- -0.797 -- -- -- -- --
54.2 0.344 12.9 -- 0.314 -- -- -- -0.679 8.55 -- -- -- --
37.35 0.285 12.9 -- -- -0.761 -- -- -0.448 -- 5.367 47520 -- --
59.73 0.361 12.9 -- -- -- -- -- -0.676 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.57 wind 1 43200 < th dose dependent rect. 10 2
4 17.89 wind 1 43200 < th dose independent rect. 11 1
5 17.93 wind 1 43200 > th dose independent rect. 11 1
10 18.15 wind 1 43200 > th dose independent rect. 2 1
11 18.16 wind 1 43200 > th dose independent rect. 8 5
15 18.18 wind 1 43200 < th dose independent rect. 8 4
16 18.23 wind 3 14400 < th dose dependent rect. 7 6
21 18.27 wind 3 14400 < th dose independent rect. 3 11
23 18.28 humidity 90 14400 < th dose dependent rect. 3 1
25 18.31 wind 3 14400 > th dose independent rect. 3 11
28 18.33 wind 1 43200 < th dose independent rect. 2 1
31 18.34 temperature 30 43200 < th dose independent rect. 2 7
33 18.34 humidity 90 43200 < th dose dependent rect. 2 3
34 18.34 wind 3 14400 < th dose dependent rect. 3 11
35 18.35 wind 1 14400 > th dose independent rect. 8 2
38 18.35 temperature 30 43200 > th dose dependent rect. 8 1
53 18.36 temperature 30 43200 > th dose independent rect. 8 1
69 18.36 wind 3 14400 < th dose independent rect. 18 20
74 18.38 temperature 30 43200 < th dose independent rect. 8 1
75 18.38 temperature 30 43200 < th dose independent rect. 6 3
77 18.38 temperature 30 43200 < th dose independent rect. 21 12
88 18.40 wind 3 14400 < th dose independent rect. 24 15
92 18.41 radiation 40 43200 > th dose independent rect. 11 1
103 18.42 wind 1 14400 > th dose dependent rect. 1 15
111 18.43 wind 5 14400 < th dose dependent rect. 1 14
118 18.45 wind 1 43200 < th dose independent rect. 23 3
122 18.45 wind 3 14400 > th dose independent rect. 18 20
128 18.45 wind 1 14400 > th dose dependent rect. 3 12
131 18.45 wind 9 14400 < th dose dependent rect. 1 15
136 18.46 wind 1 14400 > th dose dependent rect. 5 9
137 18.46 wind 9 14400 < th dose dependent rect. 5 9
154 18.48 wind 9 14400 < th dose dependent rect. 3 12
163 18.49 wind 1 43200 < th dose dependent rect. 8 18
168 18.50 wind 1 43200 < th dose dependent rect. 19 7
177 18.51 wind 1 14400 > th dose dependent sin 3 NA
178 18.51 wind 1 43200 < th dose dependent rect. 21 5
179 18.51 humidity 80 43200 < th dose dependent rect. 19 10
189 18.52 wind 3 14400 < th dose independent rect. 18 12
192 18.52 wind 5 14400 < th dose dependent sin 3 NA
213 18.53 wind 3 14400 < th dose dependent rect. 19 19
215 18.54 humidity 80 14400 > th dose independent rect. 24 5
217 18.54 wind 9 14400 < th dose dependent sin 3 NA
225 18.55 humidity 80 14400 > th dose independent rect. 3 1
227 18.55 humidity 80 43200 > th dose independent rect. 19 10
242 18.56 wind 3 14400 < th dose independent sin 4 NA
245 18.56 wind 1 43200 > th dose independent rect. 23 3
247 18.56 humidity 80 14400 > th dose independent rect. 24 3
266 18.57 humidity 80 14400 > th dose independent rect. 24 1
269 18.57 humidity 80 43200 < th dose independent rect. 18 12
311 18.58 wind 1 43200 < th dose dependent rect. 23 3
328 18.59 humidity 80 14400 < th dose independent rect. 3 1
362 18.59 wind 9 43200 > th dose dependent rect. 13 1
369 18.60 wind 3 14400 > th dose independent sin 4 NA
378 18.60 humidity 80 43200 < th dose independent rect. 19 10
387 18.60 radiation 40 43200 < th dose dependent rect. 11 1
388 18.60 wind 3 43200 < th dose dependent rect. 20 3
446 18.63 wind 1 43200 < th dose independent rect. 21 5
450 18.63 wind 3 14400 > th dose independent rect. 18 12
557 18.66 radiation 40 43200 > th dose independent sin 18 NA
580 18.66 wind 1 43200 < th dose dependent rect. 10 16
594 18.67 radiation 40 43200 < th dose independent rect. 11 2
609 18.67 wind 1 43200 < th dose dependent rect. 16 10
690 18.69 radiation 40 43200 > th dose independent no NA NA
829 18.69 radiation 1 43200 > th dose dependent rect. 11 1
843 18.70 wind 3 14400 < th dose independent sin 12 NA