BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0630700 Os12g0630700|AK067843
         (371 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0630700  Similar to NONA protein                             614   e-176
Os03g0565200  Haloacid dehalogenase-like hydrolase domain co...    85   8e-17

>Os12g0630700 Similar to NONA protein
          Length = 371

 Score =  614 bits (1584), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 313/371 (84%), Positives = 313/371 (84%)

Query: 1   MAAARCLPLRASPPEVAKAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRIPP 60
           MAAARCLPLRASPPEVAKAF                                  GRRIPP
Sbjct: 1   MAAARCLPLRASPPEVAKAFSSSIPASSSSSSSSSSTTTAAASLPLRAAVPPSSGRRIPP 60

Query: 61  LRCXXXXXXXXXXXXPDIAVLLEVEGVLADVYRFGNRQAFNVAFQNLGLDCANWTEPIYA 120
           LRC            PDIAVLLEVEGVLADVYRFGNRQAFNVAFQNLGLDCANWTEPIYA
Sbjct: 61  LRCASSSSSSQGSASPDIAVLLEVEGVLADVYRFGNRQAFNVAFQNLGLDCANWTEPIYA 120

Query: 121 DLVRKASGDEERMLLLFFNRIGWPTSLPTNEKESFMKSVLREKLKALEVFSASDSLPLRP 180
           DLVRKASGDEERMLLLFFNRIGWPTSLPTNEKESFMKSVLREKLKALEVFSASDSLPLRP
Sbjct: 121 DLVRKASGDEERMLLLFFNRIGWPTSLPTNEKESFMKSVLREKLKALEVFSASDSLPLRP 180

Query: 181 GVEQFIDDALNEGVPVAILTTYGRNGEKTSRYIIEKLGQERTSKIHIVGKEEVERSLYGQ 240
           GVEQFIDDALNEGVPVAILTTYGRNGEKTSRYIIEKLGQERTSKIHIVGKEEVERSLYGQ
Sbjct: 181 GVEQFIDDALNEGVPVAILTTYGRNGEKTSRYIIEKLGQERTSKIHIVGKEEVERSLYGQ 240

Query: 241 LVLGEGVASSLDEQLVXXXXXXXXXXXXRIAEEVASILKLSVDINAASKSSEKIIVTLRA 300
           LVLGEGVASSLDEQLV            RIAEEVASILKLSVDINAASKSSEKIIVTLRA
Sbjct: 241 LVLGEGVASSLDEQLVKEAQKAASAEKQRIAEEVASILKLSVDINAASKSSEKIIVTLRA 300

Query: 301 GSEYVGRDVQNCVLVAGSQSGVLAAERIGMPCIVVRSSLTARAEFHSAKAVMDGFGGTDL 360
           GSEYVGRDVQNCVLVAGSQSGVLAAERIGMPCIVVRSSLTARAEFHSAKAVMDGFGGTDL
Sbjct: 301 GSEYVGRDVQNCVLVAGSQSGVLAAERIGMPCIVVRSSLTARAEFHSAKAVMDGFGGTDL 360

Query: 361 TISKLLSKKWS 371
           TISKLLSKKWS
Sbjct: 361 TISKLLSKKWS 371



>Os03g0565200 Haloacid dehalogenase-like hydrolase domain containing protein
          Length = 320

 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 11/158 (6%)

Query: 82  LEVEGVLADVYRFGNRQAFNVAF--QNLGLDCANWTEPIYADLVRKASGDEERMLLLFFN 139
            + +GVL D  + G+R +FN  F  + LG+   +W   +Y +L+ K  G +ERM   +F+
Sbjct: 82  FDCDGVLVDTEKDGHRISFNETFAERELGV---SWDVELYGELL-KIGGGKERMTA-YFS 136

Query: 140 RIGWPTSLPT--NEKESFMKSVLREKLKALEVFSASDSLPLRPGVEQFIDDALNEGVPVA 197
           ++GWP   P   +E++ F+ S+ + K +          LPLRPGV++ ID+AL +GV VA
Sbjct: 137 KMGWPAKAPKTDDERKEFIASLHKRKTELFMALIEKKLLPLRPGVQRLIDEALGKGVKVA 196

Query: 198 ILTTYGRNGEKTSRYIIEKLGQERTSKIHIVGKEEVER 235
           + +T   N +  S  +   LG +R  KI I   + V R
Sbjct: 197 VCST--SNEKAVSAIVSCLLGPDRAEKITIFAGDVVPR 232



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,637,524
Number of extensions: 340943
Number of successful extensions: 811
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 269
Effective length of database: 11,709,973
Effective search space: 3149982737
Effective search space used: 3149982737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)