BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0448600 Os03g0448600|AK111867
(343 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0448600 WD40-like domain containing protein 694 0.0
Os07g0588500 WD40-like domain containing protein 503 e-143
Os01g0635400 Similar to mRNA-associated protein mrnp 41 (Ra... 207 8e-54
Os08g0176800 Similar to mRNA-associated protein mrnp 41 (Ra... 205 4e-53
Os03g0758700 WD40-like domain containing protein 69 4e-12
>Os03g0448600 WD40-like domain containing protein
Length = 343
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/343 (97%), Positives = 335/343 (97%)
Query: 1 MSXXXXXXXXVGSGKELANPPTDGISNLRFSNHSDHLLVSSWDKTVRLYDADANVLKGEF 60
MS VGSGKELANPPTDGISNLRFSNHSDHLLVSSWDKTVRLYDADANVLKGEF
Sbjct: 1 MSAAAAPAAAVGSGKELANPPTDGISNLRFSNHSDHLLVSSWDKTVRLYDADANVLKGEF 60
Query: 61 VHAGAVLDCCFHDDSSGFSAGADHTVRRLVFGSAKEDLLGRHDAPVRCVEYSYAAGQVIT 120
VHAGAVLDCCFHDDSSGFSAGADHTVRRLVFGSAKEDLLGRHDAPVRCVEYSYAAGQVIT
Sbjct: 61 VHAGAVLDCCFHDDSSGFSAGADHTVRRLVFGSAKEDLLGRHDAPVRCVEYSYAAGQVIT 120
Query: 121 GSWDKTIKCWDPRGVSGPERTLVGTYAQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMS 180
GSWDKTIKCWDPRGVSGPERTLVGTYAQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMS
Sbjct: 121 GSWDKTIKCWDPRGVSGPERTLVGTYAQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMS 180
Query: 181 QHEQKRDSSLKYQTRCVRCFPNGTGYALSSVEGRVSMEFFDLSESAQSKKYAFKCHRKSE 240
QHEQKRDSSLKYQTRCVRCFPNGTGYALSSVEGRVSMEFFDLSESAQSKKYAFKCHRKSE
Sbjct: 181 QHEQKRDSSLKYQTRCVRCFPNGTGYALSSVEGRVSMEFFDLSESAQSKKYAFKCHRKSE 240
Query: 241 AGRDTVYPVNAIAFHPIYGTFATGGCDGFVNVWDGINKKRLYQYSKYASSIAALSFSKDG 300
AGRDTVYPVNAIAFHPIYGTFATGGCDGFVNVWDGINKKRLYQYSKYASSIAALSFSKDG
Sbjct: 241 AGRDTVYPVNAIAFHPIYGTFATGGCDGFVNVWDGINKKRLYQYSKYASSIAALSFSKDG 300
Query: 301 HLLAVASSYTYEEGEKSHEPDAIFIRSVNEVEVKPKPKALAAP 343
HLLAVASSYTYEEGEKSHEPDAIFIRSVNEVEVKPKPKALAAP
Sbjct: 301 HLLAVASSYTYEEGEKSHEPDAIFIRSVNEVEVKPKPKALAAP 343
>Os07g0588500 WD40-like domain containing protein
Length = 364
Score = 503 bits (1296), Expect = e-143, Method: Compositional matrix adjust.
Identities = 237/325 (72%), Positives = 275/325 (84%), Gaps = 1/325 (0%)
Query: 15 KELANPPTDGISNLRFSNHSDHLLVSSWDKTVRLYDADANVLKGEFVHAGAVLDCCFHDD 74
KEL PP+DG+S+LRFS HSD LLVSSWDKTVRLYDA+ANV +G F+HA +VL CCFHDD
Sbjct: 26 KELREPPSDGVSSLRFSKHSDRLLVSSWDKTVRLYDAEANVPRGVFMHAASVLGCCFHDD 85
Query: 75 SSGFSAGADHTVRRLVFGSAKEDLLGRHDAPVRCVEYSYAAGQVITGSWDKTIKCWDPRG 134
SSGFSA AD+TVRRL F S L RHDA V CVEYSY+ GQVITGSWDKTI CWDPRG
Sbjct: 86 SSGFSASADNTVRRLAFSSGGNYFLVRHDAAVSCVEYSYSTGQVITGSWDKTIMCWDPRG 145
Query: 135 VSGP-ERTLVGTYAQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQHEQKRDSSLKYQ 193
V+G TLVGT+ QPERVYSLS+ G LVVATAGRHVN+YDLR+MS+ EQ+R+S L+YQ
Sbjct: 146 VNGTSHHTLVGTHNQPERVYSLSVSGYNLVVATAGRHVNVYDLRSMSRPEQQRESPLRYQ 205
Query: 194 TRCVRCFPNGTGYALSSVEGRVSMEFFDLSESAQSKKYAFKCHRKSEAGRDTVYPVNAIA 253
TRCV+C+PNGTG+AL SVEGRV+MEF+D SESA KKY+FKCHR E G VYPVNAI+
Sbjct: 206 TRCVQCYPNGTGFALGSVEGRVAMEFYDQSESAPYKKYSFKCHRVPEDGETKVYPVNAIS 265
Query: 254 FHPIYGTFATGGCDGFVNVWDGINKKRLYQYSKYASSIAALSFSKDGHLLAVASSYTYEE 313
FHP++GTFATGGCD FVN+WDG N+++L+Q+ +Y SSIAALSFS+DG LLAVASSYTYEE
Sbjct: 266 FHPVHGTFATGGCDRFVNLWDGANRRKLFQFPRYPSSIAALSFSRDGRLLAVASSYTYEE 325
Query: 314 GEKSHEPDAIFIRSVNEVEVKPKPK 338
G+ H PDAIFIR VNEV+VKP+PK
Sbjct: 326 GDIPHPPDAIFIRDVNEVQVKPRPK 350
>Os01g0635400 Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog)
Length = 344
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 183/332 (55%), Gaps = 20/332 (6%)
Query: 16 ELANPPTDGISNLRFSNHSDHLLVSSWDKTVRLYDADAN---VLKGEFVHAGAVLDCCFH 72
E+ P D +S+L FS ++HL+ +SWD VR ++ K H VL +
Sbjct: 20 EVNPAPGDSVSSLSFSPKANHLVATSWDNQVRCWEIQPGGQCQAKASISHDQPVLCSAWK 79
Query: 73 DD-SSGFSAGADHTVRRLVFGSAKEDL-LGRHDAPVRCVEYSYAAGQVITGSWDKTIKCW 130
DD ++ FS G D ++ S + + L H+APV+ + + +++GSWDKT++ W
Sbjct: 80 DDGTTVFSGGCDKQIKMWPLLSGGQPMVLSGHEAPVKELAWIPQMNLLVSGSWDKTLRYW 139
Query: 131 DPRGVSGPERTLVGTYAQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQHEQKRDSSL 190
D V P+ V PER Y+LSL +VV TA R+V +++++N ++ S L
Sbjct: 140 D---VRQPQPAHVQQL--PERCYALSLSYPLMVVGTADRNVIVFNMQNPQAEFKRIVSPL 194
Query: 191 KYQTRCVRCFPNGTGYALSSVEGRVSMEFFDLSESAQSKKYAFKCHRKSEAGRDTVYPVN 250
K QTRC+ FP+ G+ + S+EGRV + D + Q K + FKCHR G D +Y VN
Sbjct: 195 KLQTRCLAAFPDQQGFLVGSIEGRVGVHHVD--DGQQGKNFTFKCHRD---GND-IYAVN 248
Query: 251 AIAFHPIYGTFATGGCDGFVNVWDGINKKRLYQYSKYASSIAALSFSKDGHLLAVASSYT 310
A+ FHP++ TFAT G DG N WD +K+RL ++K S I +F++DG + A A Y
Sbjct: 249 ALNFHPVHHTFATSGSDGGFNFWDKDSKQRLKAFNKCPSPITCSTFNQDGSIFAYAVCYD 308
Query: 311 YEEGEKSHEPDA----IFIRSVNEVEVKPKPK 338
+ +G + H P IF+ SV E EVK KP+
Sbjct: 309 WSKGAEKHNPSTAKTNIFLHSVQESEVKGKPR 340
>Os08g0176800 Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog)
Length = 342
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 184/331 (55%), Gaps = 19/331 (5%)
Query: 16 ELANPPTDGISNLRFSNHSDHLLVSSWDKTVRLYD--ADANVLKGEFVHAGAVLDCCFHD 73
E+ P D +S+L FS S+ L+ +SWD VR ++ ++ K H VL + D
Sbjct: 17 EVLPNPGDSVSSLSFSPKSNLLVATSWDNQVRCWEIVGGSSQPKASISHDQPVLCSAWKD 76
Query: 74 D-SSGFSAGADHTVRRL-VFGSAKEDLLGRHDAPVRCVEYSYAAGQVITGSWDKTIKCWD 131
D ++ FS G D V+ + + + HDAPV+ + + +++GSWDKT++ WD
Sbjct: 77 DGTTVFSGGCDKQVKMWPLLSGGQAQTVAMHDAPVKEIAWIPQMNLLVSGSWDKTLRYWD 136
Query: 132 PRGVSGPERTLVGTYAQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQHEQKRDSSLK 191
R + V PER Y+L++ ++V TA R++ +++L+N ++ S LK
Sbjct: 137 TR-----QSNPVHVQQLPERCYALTVNYPLMIVGTADRNLVVFNLQNPQTEFKRIQSPLK 191
Query: 192 YQTRCVRCFPNGTGYALSSVEGRVSMEFFDLSESAQSKKYAFKCHRKSEAGRDTVYPVNA 251
YQTRC+ FP+ G+ + S+EGRV + D +S QSK + FKCHR+ G D ++ VN+
Sbjct: 192 YQTRCLAAFPDQQGFLVGSIEGRVGVHHID--DSQQSKNFTFKCHRE---GND-IFSVNS 245
Query: 252 IAFHPIYGTFATGGCDGFVNVWDGINKKRLYQYSKYASSIAALSFSKDGHLLAVASSYTY 311
+ FHP++ TFAT G DG N WD +K+RL +S+ I +F+ DG + A A Y +
Sbjct: 246 LNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAFSRCPLPIPCSTFNSDGSIFAYAVCYDW 305
Query: 312 EEGEKSHEP----DAIFIRSVNEVEVKPKPK 338
G ++H P +I++ S E EVK KP+
Sbjct: 306 SRGAENHNPATAKTSIYLHSPQESEVKGKPR 336
>Os03g0758700 WD40-like domain containing protein
Length = 101
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 26 SNLRFSNHSDHLLVSSWDKTVRLYDADANVLKGEFVHAGAVLDCCFHDDSSGFSAGADHT 85
S LRF+ S+HLLVSSWD +RLYDADA L+ E A+LDCCF D++ + G+D +
Sbjct: 17 SRLRFAPSSNHLLVSSWDSGLRLYDADACELRMEAKSEAALLDCCFQDEAVALTGGSDGS 76
Query: 86 VRR 88
+ R
Sbjct: 77 ITR 79
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,046,230
Number of extensions: 498542
Number of successful extensions: 1577
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1552
Number of HSP's successfully gapped: 5
Length of query: 343
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 241
Effective length of database: 11,709,973
Effective search space: 2822103493
Effective search space used: 2822103493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)