Os08g0176800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog).
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Os08g0176800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.89 | 0.169 | 11.7 | 0.724 | 0.198 | -0.27 | 0.032 | 0.177 | 0.326 | 1.65 | 21.24 | 1516 | -- | -- |
| 12.94 | 0.168 | 11.7 | 0.694 | 0.196 | -0.261 | 0.0537 | -- | 0.316 | 1.68 | 21.86 | 1534 | -- | -- |
| 12.89 | 0.167 | 11.7 | 0.724 | 0.197 | -0.27 | -- | 0.178 | 0.326 | 1.63 | 21.24 | 1516 | -- | -- |
| 12.91 | 0.167 | 11.7 | 0.679 | 0.189 | -0.26 | -- | -- | 0.313 | 1.57 | 21.86 | 1614 | -- | -- |
| 14.94 | 0.18 | 11.7 | 0.716 | -- | -0.248 | -- | 0.145 | 0.312 | -- | 30.45 | 1705 | -- | -- |
| 15.44 | 0.184 | 11.8 | 0.625 | 0.199 | -- | -0.0171 | -- | 0.241 | 1.57 | -- | -- | -- | -- |
| 15.44 | 0.184 | 11.8 | 0.625 | 0.199 | -- | -- | -- | 0.242 | 1.58 | -- | -- | -- | -- |
| 14.49 | 0.177 | 11.7 | 0.7 | -- | -0.338 | -- | -- | 0.324 | -- | 21.22 | 1715 | -- | -- |
| 22.63 | 0.222 | 11.8 | -- | 0.187 | -0.285 | -- | -- | 0.242 | 1.76 | 39.99 | 7531 | -- | -- |
| 17.86 | 0.197 | 11.8 | 0.633 | -- | -- | -- | -- | 0.246 | -- | -- | -- | -- | -- |
| 25.74 | 0.237 | 11.8 | -- | 0.21 | -- | -- | -- | 0.172 | 1.67 | -- | -- | -- | -- |
| 22.39 | 0.22 | 11.8 | -- | -- | -0.426 | -- | -- | 0.18 | -- | 49.83 | 30550 | -- | -- |
| 28.43 | 0.249 | 11.8 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 2 | 12.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 3 | 12.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 4 | 12.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 25 | 12.55 | radiation | 10 | 1440 | < th | dose dependent | sin | 14 | NA |
| 29 | 12.57 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 34 | 12.58 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 39 | 12.59 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 41 | 12.59 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 67 | 12.63 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 158 | 12.79 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 170 | 12.80 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 238 | 12.84 | radiation | 1 | 1440 | > th | dose dependent | sin | 14 | NA |
| 240 | 12.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 255 | 12.85 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 347 | 12.90 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 357 | 12.91 | radiation | 10 | 1440 | > th | dose independent | sin | 14 | NA |
| 391 | 12.93 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 403 | 12.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 426 | 12.94 | radiation | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 428 | 12.94 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 458 | 12.95 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 477 | 12.95 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 484 | 12.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 546 | 12.98 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 589 | 12.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 595 | 13.00 | radiation | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 604 | 13.00 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 611 | 13.00 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 657 | 13.01 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 727 | 13.01 | radiation | 40 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 746 | 13.02 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 878 | 13.03 | radiation | 40 | 1440 | < th | dose dependent | rect. | 1 | 19 |
| 919 | 13.04 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 922 | 13.04 | radiation | 40 | 1440 | < th | dose dependent | no | NA | NA |