Os03g0448600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os03g0448600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.58 | 0.432 | 9.99 | 0.771 | 0.432 | -0.997 | -1.63 | 2.74 | 0.268 | 23.2 | 25.7 | 954 | -- | -- |
| 91.81 | 0.446 | 10.1 | 0.0777 | 0.478 | -0.856 | -0.901 | -- | 0.119 | 22.3 | 25.26 | 897 | -- | -- |
| 94.07 | 0.452 | 10 | 0.601 | 0.442 | -0.907 | -- | 1.89 | 0.173 | 21.9 | 25.7 | 931 | -- | -- |
| 95.49 | 0.455 | 10.1 | 0.0977 | 0.446 | -0.831 | -- | -- | 0.0422 | 22.2 | 25.22 | 895 | -- | -- |
| 99.58 | 0.465 | 10 | 0.63 | -- | -0.866 | -- | 2.01 | 0.148 | -- | 25.9 | 1272 | -- | -- |
| 109.91 | 0.491 | 10.1 | -0.202 | 0.0863 | -- | -1.24 | -- | -0.261 | 0.399 | -- | -- | -- | -- |
| 116.04 | 0.504 | 10.1 | -0.152 | 0.132 | -- | -- | -- | -0.253 | 21.2 | -- | -- | -- | -- |
| 96.3 | 0.459 | 10.1 | 0.0644 | -- | -0.534 | -- | -- | -0.0579 | -- | 23.1 | 1662 | -- | -- |
| 95.72 | 0.456 | 10.1 | -- | 0.435 | -0.809 | -- | -- | 0.0242 | 22.2 | 25.3 | 895 | -- | -- |
| 117.06 | 0.506 | 10.1 | -0.151 | -- | -- | -- | -- | -0.254 | -- | -- | -- | -- | -- |
| 116.64 | 0.505 | 10.1 | -- | 0.133 | -- | -- | -- | -0.236 | 21.1 | -- | -- | -- | -- |
| 96.41 | 0.459 | 10.1 | -- | -- | -0.526 | -- | -- | -0.0679 | -- | 23.1 | 1662 | -- | -- |
| 117.66 | 0.506 | 10.1 | -- | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.55 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 14 |
| 5 | 79.09 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 9 |
| 8 | 79.26 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 14 | 79.66 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 21 | 79.91 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 11 |
| 26 | 80.14 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 13 |
| 189 | 85.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 199 | 85.19 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 244 | 85.49 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 261 | 85.60 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 271 | 85.77 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 272 | 85.82 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 275 | 85.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 277 | 85.85 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 322 | 86.02 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 328 | 86.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 340 | 86.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 344 | 86.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 345 | 86.15 | radiation | 1 | 1440 | > th | dose independent | sin | 19 | NA |
| 350 | 86.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 352 | 86.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 355 | 86.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 358 | 86.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 363 | 86.19 | humidity | 50 | 14400 | > th | dose independent | rect. | 1 | 10 |
| 391 | 86.26 | humidity | 50 | 14400 | > th | dose independent | rect. | 3 | 8 |
| 397 | 86.30 | humidity | 50 | 14400 | > th | dose independent | rect. | 21 | 14 |
| 400 | 86.31 | humidity | 50 | 14400 | > th | dose independent | rect. | 23 | 12 |
| 401 | 86.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 403 | 86.32 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 409 | 86.34 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 8 |
| 417 | 86.36 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 431 | 86.39 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 437 | 86.41 | humidity | 50 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 438 | 86.41 | humidity | 50 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 441 | 86.43 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 454 | 86.47 | humidity | 60 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 500 | 86.64 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 517 | 86.68 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 519 | 86.68 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 520 | 86.69 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 523 | 86.69 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 526 | 86.70 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 529 | 86.71 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 533 | 86.73 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 542 | 86.73 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 548 | 86.75 | humidity | 50 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 561 | 86.76 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 624 | 86.86 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 631 | 86.88 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 632 | 86.88 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 655 | 86.94 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 676 | 86.98 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 696 | 87.03 | humidity | 50 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 752 | 87.17 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 785 | 87.25 | radiation | 30 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 786 | 87.25 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 14 |
| 790 | 87.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 792 | 87.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 806 | 87.29 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 835 | 87.33 | radiation | 30 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 856 | 87.39 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 866 | 87.41 | humidity | 70 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 887 | 87.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 889 | 87.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 916 | 87.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 917 | 87.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 924 | 87.55 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 945 | 87.59 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 973 | 87.63 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 980 | 87.65 | temperature | 25 | 270 | < th | dose dependent | sin | 16 | NA |
| 986 | 87.67 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |