Os07g0588500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0588500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : WD40-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 278.87 | 0.785 | 3.08 | 0.63 | 0.188 | 15.4 | 0.716 | 31.4 | 0.172 | 6.27 | 1016 | 1567 | -- | -- |
| 305.22 | 0.814 | 2.96 | 0.442 | 0.238 | 0.441 | 0.814 | -- | 0.162 | 7.1 | 1018 | 1179 | -- | -- |
| 279.63 | 0.779 | 3.08 | 0.623 | 0.199 | 15.8 | -- | 32.2 | 0.161 | 7.54 | 1016 | 1563 | -- | -- |
| 302.09 | 0.809 | 2.95 | 0.513 | 0.262 | 0.947 | -- | -- | 0.196 | 7.84 | 1012 | 1719 | -- | -- |
| 281.7 | 0.782 | 3.11 | 0.697 | -- | 17.9 | -- | 36.4 | 0.171 | -- | 1016 | 1567 | -- | -- |
| 305.73 | 0.82 | 2.97 | 0.411 | 0.244 | -- | 0.772 | -- | 0.153 | 7.25 | -- | -- | -- | -- |
| 307.03 | 0.821 | 2.97 | 0.43 | 0.251 | -- | -- | -- | 0.153 | 8.32 | -- | -- | -- | -- |
| 305.49 | 0.814 | 2.96 | 0.505 | -- | 1 | -- | -- | 0.194 | -- | 1012 | 1677 | -- | -- |
| 308.39 | 0.818 | 2.97 | -- | 0.25 | 0.873 | -- | -- | 0.128 | 7.84 | 1013 | 1678 | -- | -- |
| 310.52 | 0.823 | 2.97 | 0.432 | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
| 311.91 | 0.826 | 2.98 | -- | 0.253 | -- | -- | -- | 0.105 | 8.2 | -- | -- | -- | -- |
| 311.82 | 0.822 | 2.98 | -- | -- | 0.885 | -- | -- | 0.129 | -- | 1013 | 1678 | -- | -- |
| 315.44 | 0.829 | 2.98 | -- | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 277.97 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 9 | 277.99 | atmosphere | 1015 | 1440 | > th | dose dependent | sin | 23 | NA |
| 29 | 278.31 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 43 | 278.32 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 119 | 278.92 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 120 | 279.06 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 2 | 11 |
| 124 | 279.08 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 131 | 279.10 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 142 | 279.25 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 146 | 279.34 | atmosphere | 1015 | 1440 | > th | dose independent | sin | 0 | NA |
| 147 | 279.35 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 149 | 279.38 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 155 | 279.45 | atmosphere | 1015 | 1440 | > th | dose independent | sin | 4 | NA |
| 156 | 279.47 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 159 | 279.48 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 160 | 279.49 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 172 | 279.63 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 205 | 279.69 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 206 | 279.70 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 228 | 279.89 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 5 | 1 |
| 336 | 280.30 | atmosphere | 1015 | 1440 | < th | dose independent | sin | 4 | NA |
| 371 | 280.98 | atmosphere | 1010 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 394 | 281.46 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 411 | 281.58 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 413 | 281.59 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 419 | 281.60 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 1 | 18 |
| 655 | 285.99 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 668 | 286.19 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 739 | 286.49 | atmosphere | 1015 | 1440 | > th | dose dependent | no | NA | NA |
| 768 | 286.50 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 17 | 22 |
| 798 | 286.74 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 826 | 286.81 | atmosphere | 1015 | 1440 | > th | dose independent | no | NA | NA |
| 848 | 286.82 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 899 | 287.28 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 905 | 287.29 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 911 | 287.30 | atmosphere | 1015 | 1440 | < th | dose independent | no | NA | NA |
| 919 | 287.30 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 927 | 287.31 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 995 | 288.58 | radiation | 20 | 90 | < th | dose independent | rect. | 9 | 2 |
| 997 | 288.67 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 13 | 23 |