BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0588500 Os07g0588500|Os07g0588500
(364 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0588500 WD40-like domain containing protein 734 0.0
Os03g0448600 WD40-like domain containing protein 503 e-143
Os08g0176800 Similar to mRNA-associated protein mrnp 41 (Ra... 204 1e-52
Os01g0635400 Similar to mRNA-associated protein mrnp 41 (Ra... 198 4e-51
>Os07g0588500 WD40-like domain containing protein
Length = 364
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/364 (97%), Positives = 356/364 (97%)
Query: 1 MSTAPTGDPPVRVAVASXXXXXXXXKELREPPSDGVSSLRFSKHSDRLLVSSWDKTVRLY 60
MSTAPTGDPPVRVAVAS KELREPPSDGVSSLRFSKHSDRLLVSSWDKTVRLY
Sbjct: 1 MSTAPTGDPPVRVAVASGGGGMGLGKELREPPSDGVSSLRFSKHSDRLLVSSWDKTVRLY 60
Query: 61 DAEANVPRGVFMHAASVLGCCFHDDSSGFSASADNTVRRLAFSSGGNYFLVRHDAAVSCV 120
DAEANVPRGVFMHAASVLGCCFHDDSSGFSASADNTVRRLAFSSGGNYFLVRHDAAVSCV
Sbjct: 61 DAEANVPRGVFMHAASVLGCCFHDDSSGFSASADNTVRRLAFSSGGNYFLVRHDAAVSCV 120
Query: 121 EYSYSTGQVITGSWDKTIMCWDPRGVNGTSHHTLVGTHNQPERVYSLSVSGYNLVVATAG 180
EYSYSTGQVITGSWDKTIMCWDPRGVNGTSHHTLVGTHNQPERVYSLSVSGYNLVVATAG
Sbjct: 121 EYSYSTGQVITGSWDKTIMCWDPRGVNGTSHHTLVGTHNQPERVYSLSVSGYNLVVATAG 180
Query: 181 RHVNVYDLRSMSRPEQQRESPLRYQTRCVQCYPNGTGFALGSVEGRVAMEFYDQSESAPY 240
RHVNVYDLRSMSRPEQQRESPLRYQTRCVQCYPNGTGFALGSVEGRVAMEFYDQSESAPY
Sbjct: 181 RHVNVYDLRSMSRPEQQRESPLRYQTRCVQCYPNGTGFALGSVEGRVAMEFYDQSESAPY 240
Query: 241 KKYSFKCHRVPEDGETKVYPVNAISFHPVHGTFATGGCDRFVNLWDGANRRKLFQFPRYP 300
KKYSFKCHRVPEDGETKVYPVNAISFHPVHGTFATGGCDRFVNLWDGANRRKLFQFPRYP
Sbjct: 241 KKYSFKCHRVPEDGETKVYPVNAISFHPVHGTFATGGCDRFVNLWDGANRRKLFQFPRYP 300
Query: 301 SSIAALSFSRDGRLLAVASSYTYEEGDIPHPPDAIFIRDVNEVQVKPRPKITFTDPPSVA 360
SSIAALSFSRDGRLLAVASSYTYEEGDIPHPPDAIFIRDVNEVQVKPRPKITFTDPPSVA
Sbjct: 301 SSIAALSFSRDGRLLAVASSYTYEEGDIPHPPDAIFIRDVNEVQVKPRPKITFTDPPSVA 360
Query: 361 SPSV 364
SPSV
Sbjct: 361 SPSV 364
>Os03g0448600 WD40-like domain containing protein
Length = 343
Score = 503 bits (1296), Expect = e-143, Method: Compositional matrix adjust.
Identities = 237/325 (72%), Positives = 275/325 (84%), Gaps = 1/325 (0%)
Query: 26 KELREPPSDGVSSLRFSKHSDRLLVSSWDKTVRLYDAEANVPRGVFMHAASVLGCCFHDD 85
KEL PP+DG+S+LRFS HSD LLVSSWDKTVRLYDA+ANV +G F+HA +VL CCFHDD
Sbjct: 15 KELANPPTDGISNLRFSNHSDHLLVSSWDKTVRLYDADANVLKGEFVHAGAVLDCCFHDD 74
Query: 86 SSGFSASADNTVRRLAFSSGGNYFLVRHDAAVSCVEYSYSTGQVITGSWDKTIMCWDPRG 145
SSGFSA AD+TVRRL F S L RHDA V CVEYSY+ GQVITGSWDKTI CWDPRG
Sbjct: 75 SSGFSAGADHTVRRLVFGSAKEDLLGRHDAPVRCVEYSYAAGQVITGSWDKTIKCWDPRG 134
Query: 146 VNGTSHHTLVGTHNQPERVYSLSVSGYNLVVATAGRHVNVYDLRSMSRPEQQRESPLRYQ 205
V+G TLVGT+ QPERVYSLS+ G LVVATAGRHVN+YDLR+MS+ EQ+R+S L+YQ
Sbjct: 135 VSGP-ERTLVGTYAQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQHEQKRDSSLKYQ 193
Query: 206 TRCVQCYPNGTGFALGSVEGRVAMEFYDQSESAPYKKYSFKCHRVPEDGETKVYPVNAIS 265
TRCV+C+PNGTG+AL SVEGRV+MEF+D SESA KKY+FKCHR E G VYPVNAI+
Sbjct: 194 TRCVRCFPNGTGYALSSVEGRVSMEFFDLSESAQSKKYAFKCHRKSEAGRDTVYPVNAIA 253
Query: 266 FHPVHGTFATGGCDRFVNLWDGANRRKLFQFPRYPSSIAALSFSRDGRLLAVASSYTYEE 325
FHP++GTFATGGCD FVN+WDG N+++L+Q+ +Y SSIAALSFS+DG LLAVASSYTYEE
Sbjct: 254 FHPIYGTFATGGCDGFVNVWDGINKKRLYQYSKYASSIAALSFSKDGHLLAVASSYTYEE 313
Query: 326 GDIPHPPDAIFIRDVNEVQVKPRPK 350
G+ H PDAIFIR VNEV+VKP+PK
Sbjct: 314 GEKSHEPDAIFIRSVNEVEVKPKPK 338
>Os08g0176800 Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog)
Length = 342
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 182/333 (54%), Gaps = 20/333 (6%)
Query: 27 ELREPPSDGVSSLRFSKHSDRLLVSSWDKTVRLYD--AEANVPRGVFMHAASVLGCCFHD 84
E+ P D VSSL FS S+ L+ +SWD VR ++ ++ P+ H VL + D
Sbjct: 17 EVLPNPGDSVSSLSFSPKSNLLVATSWDNQVRCWEIVGGSSQPKASISHDQPVLCSAWKD 76
Query: 85 D-SSGFSASADNTVRRLAFSSGGNYFLV-RHDAAVSCVEYSYSTGQVITGSWDKTIMCWD 142
D ++ FS D V+ SGG V HDA V + + +++GSWDKT+ WD
Sbjct: 77 DGTTVFSGGCDKQVKMWPLLSGGQAQTVAMHDAPVKEIAWIPQMNLLVSGSWDKTLRYWD 136
Query: 143 PRGVNGTSHHTLVGTHNQPERVYSLSVSGYNLVVATAGRHVNVYDLRSMSRPEQQRESPL 202
R N V PER Y+L+V+ ++V TA R++ V++L++ ++ +SPL
Sbjct: 137 TRQSNP------VHVQQLPERCYALTVNYPLMIVGTADRNLVVFNLQNPQTEFKRIQSPL 190
Query: 203 RYQTRCVQCYPNGTGFALGSVEGRVAMEFYDQSESAPYKKYSFKCHRVPEDGETKVYPVN 262
+YQTRC+ +P+ GF +GS+EGRV + D S+ + K ++FKCHR D ++ VN
Sbjct: 191 KYQTRCLAAFPDQQGFLVGSIEGRVGVHHIDDSQQS--KNFTFKCHREGND----IFSVN 244
Query: 263 AISFHPVHGTFATGGCDRFVNLWDGANRRKLFQFPRYPSSIAALSFSRDGRLLAVASSYT 322
+++FHPVH TFAT G D N WD ++++L F R P I +F+ DG + A A Y
Sbjct: 245 SLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAFSRCPLPIPCSTFNSDGSIFAYAVCYD 304
Query: 323 YEEGDIPHPP----DAIFIRDVNEVQVKPRPKI 351
+ G H P +I++ E +VK +P+I
Sbjct: 305 WSRGAENHNPATAKTSIYLHSPQESEVKGKPRI 337
>Os01g0635400 Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog)
Length = 344
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 178/335 (53%), Gaps = 21/335 (6%)
Query: 27 ELREPPSDGVSSLRFSKHSDRLLVSSWDKTVRLYDAEAN---VPRGVFMHAASVLGCCFH 83
E+ P D VSSL FS ++ L+ +SWD VR ++ + + H VL +
Sbjct: 20 EVNPAPGDSVSSLSFSPKANHLVATSWDNQVRCWEIQPGGQCQAKASISHDQPVLCSAWK 79
Query: 84 DD-SSGFSASADNTVRRLAFSSGGN-YFLVRHDAAVSCVEYSYSTGQVITGSWDKTIMCW 141
DD ++ FS D ++ SGG L H+A V + + +++GSWDKT+ W
Sbjct: 80 DDGTTVFSGGCDKQIKMWPLLSGGQPMVLSGHEAPVKELAWIPQMNLLVSGSWDKTLRYW 139
Query: 142 DPRGVNGTSHHTLVGTHNQPERVYSLSVSGYNLVVATAGRHVNVYDLRSMSRPEQQRESP 201
D R L PER Y+LS+S +VV TA R+V V+++++ ++ SP
Sbjct: 140 DVRQPQPAHVQQL------PERCYALSLSYPLMVVGTADRNVIVFNMQNPQAEFKRIVSP 193
Query: 202 LRYQTRCVQCYPNGTGFALGSVEGRVAMEFYDQSESAPYKKYSFKCHRVPEDGETKVYPV 261
L+ QTRC+ +P+ GF +GS+EGRV + D + K ++FKCHR D +Y V
Sbjct: 194 LKLQTRCLAAFPDQQGFLVGSIEGRVGVHHVDDGQQG--KNFTFKCHRDGND----IYAV 247
Query: 262 NAISFHPVHGTFATGGCDRFVNLWDGANRRKLFQFPRYPSSIAALSFSRDGRLLAVASSY 321
NA++FHPVH TFAT G D N WD ++++L F + PS I +F++DG + A A Y
Sbjct: 248 NALNFHPVHHTFATSGSDGGFNFWDKDSKQRLKAFNKCPSPITCSTFNQDGSIFAYAVCY 307
Query: 322 TYEEGDIPHPPDA----IFIRDVNEVQVKPRPKIT 352
+ +G H P IF+ V E +VK +P++
Sbjct: 308 DWSKGAEKHNPSTAKTNIFLHSVQESEVKGKPRVN 342
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,214,303
Number of extensions: 626473
Number of successful extensions: 1653
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1630
Number of HSP's successfully gapped: 4
Length of query: 364
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 262
Effective length of database: 11,709,973
Effective search space: 3068012926
Effective search space used: 3068012926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)