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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0758700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0279) R2 : 0.217
β1 : -0.019 (0.102) R2dD : 6.2e-05 R2D : -0.00199
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.82 (0.231) R2dE : 0.107 R2E : 0.109
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.57 (0.863) R2dD*E : 0.0995 R2D*E : 0.099
γ1 : -0.112 (0.0596) R2dN8 : 0.00817 R2N8 : 0.0102
σ : 0.521
deviance : 125.25
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 78.57
memory length : 14
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.82
open length of G : 0.86

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
122.47 0.52 3.29 -0.0236 0.231 1.71 0.0195 -6.58 -0.118 7.46 79 12 7.8 0.901
137.89 0.547 3.29 -0.0304 0.232 1.71 -0.454 -- -0.129 7.02 79 12 7.82 0.898
122.47 0.515 3.29 -0.0232 0.231 1.71 -- -6.57 -0.118 7.45 78.89 13 7.82 0.891
138.39 0.548 3.29 -0.0382 0.231 1.71 -- -- -0.128 7.42 78.95 13 7.81 0.886
125.25 0.521 3.29 -0.019 -- 1.82 -- -6.57 -0.112 -- 78.57 14 7.82 0.86
152.48 0.579 3.3 -0.0388 0.315 -- -0.435 -- -0.158 7.22 -- -- -- --
152.95 0.579 3.29 -0.0471 0.314 -- -- -- -0.156 7.48 -- -- -- --
141.16 0.553 3.3 -0.034 -- 1.82 -- -- -0.122 -- 78.67 13 7.8 0.888
138.43 0.548 3.29 -- 0.23 1.71 -- -- -0.124 7.43 78.7 13 7.81 0.882
158.21 0.588 3.3 -0.0423 -- -- -- -- -0.151 -- -- -- -- --
153.01 0.579 3.29 -- 0.313 -- -- -- -0.151 7.49 -- -- -- --
141.19 0.553 3.29 -- -- 1.82 -- -- -0.118 -- 78.68 13 7.8 0.886
158.26 0.587 3.3 -- -- -- -- -- -0.147 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.69 humidity 80 10 < th dose independent rect. 7 1
5 123.25 humidity 80 10 < th dose independent rect. 23 9
11 124.68 atmosphere 1000 270 < th dose dependent rect. 7 3
12 125.09 radiation 10 30 > th dose independent rect. 7 1
23 125.69 atmosphere 1000 90 < th dose dependent rect. 9 2
27 126.94 atmosphere 1000 10 < th dose dependent rect. 8 2
64 129.29 atmosphere 1000 90 < th dose independent rect. 8 3
85 129.62 humidity 90 10 < th dose dependent rect. 7 1
93 130.62 atmosphere 1000 10 < th dose independent rect. 8 2
124 131.91 atmosphere 1000 10 < th dose dependent rect. 6 6
129 132.00 humidity 80 10 < th dose dependent rect. 5 3
133 132.04 humidity 80 10 < th dose dependent rect. 23 9
134 132.05 humidity 80 10 < th dose dependent rect. 1 7
167 132.67 humidity 80 10 < th dose dependent rect. 20 12
180 132.96 radiation 10 10 > th dose dependent rect. 16 16
185 133.15 radiation 10 10 > th dose dependent rect. 7 1
255 134.31 radiation 30 90 > th dose dependent rect. 7 1
301 134.46 radiation 30 90 > th dose independent rect. 7 1
339 134.93 radiation 30 10 > th dose dependent rect. 7 1
443 135.12 humidity 70 30 < th dose independent rect. 18 14
780 135.91 atmosphere 1005 30 > th dose dependent rect. 7 1
843 136.25 atmosphere 1000 720 < th dose dependent sin 6 NA
858 136.37 atmosphere 1000 10 < th dose independent rect. 6 6
974 137.11 temperature 30 4320 < th dose independent rect. 8 1