BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0427000 Os03g0427000|AK069737
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0427000 Conserved hypothetical protein 515 e-146
Os07g0598200 Conserved hypothetical protein 435 e-122
Os01g0802600 Similar to Circadian clock coupling factor ZGT 201 4e-52
Os05g0494600 Conserved hypothetical protein 169 2e-42
>Os03g0427000 Conserved hypothetical protein
Length = 247
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MVLVVKQYRCTHSASCLCLKGHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKRVL 60
MVLVVKQYRCTHSASCLCLKGHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKRVL
Sbjct: 1 MVLVVKQYRCTHSASCLCLKGHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKRVL 60
Query: 61 WKEFCHARAPRMMQDLHSGGSHIVDGNWKALGKLLIHCAGCTKGGLFGNIHVPGHFVFRT 120
WKEFCHARAPRMMQDLHSGGSHIVDGNWKALGKLLIHCAGCTKGGLFGNIHVPGHFVFRT
Sbjct: 61 WKEFCHARAPRMMQDLHSGGSHIVDGNWKALGKLLIHCAGCTKGGLFGNIHVPGHFVFRT 120
Query: 121 RFSRTCGKSILPPQCRTDVLYVSDPCEHLDQGEEGDLGFFRGIFKSFASSKVKKMLIEKQ 180
RFSRTCGKSILPPQCRTDVLYVSDPCEHLDQGEEGDLGFFRGIFKSFASSKVKKMLIEKQ
Sbjct: 121 RFSRTCGKSILPPQCRTDVLYVSDPCEHLDQGEEGDLGFFRGIFKSFASSKVKKMLIEKQ 180
Query: 181 AKFHPKEVCPYCKAKLWNLLQANMIPRSASIRLDAYDDSVEYYICLNGHILGLCTLMPVS 240
AKFHPKEVCPYCKAKLWNLLQANMIPRSASIRLDAYDDSVEYYICLNGHILGLCTLMPVS
Sbjct: 181 AKFHPKEVCPYCKAKLWNLLQANMIPRSASIRLDAYDDSVEYYICLNGHILGLCTLMPVS 240
Query: 241 DSEDAKE 247
DSEDAKE
Sbjct: 241 DSEDAKE 247
>Os07g0598200 Conserved hypothetical protein
Length = 248
Score = 435 bits (1119), Expect = e-122, Method: Compositional matrix adjust.
Identities = 199/247 (80%), Positives = 227/247 (91%)
Query: 1 MVLVVKQYRCTHSASCLCLKGHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKRVL 60
MVLVVKQ+RC HSASC+C+KGH+SEDALFLVFRHMNWNPR+IA+ SCV KWFD++AK+VL
Sbjct: 1 MVLVVKQHRCMHSASCVCIKGHLSEDALFLVFRHMNWNPRLIAVLSCVCKWFDEVAKQVL 60
Query: 61 WKEFCHARAPRMMQDLHSGGSHIVDGNWKALGKLLIHCAGCTKGGLFGNIHVPGHFVFRT 120
WKEFCHARAP+MM DLHSGGSHIVDGNWKALGKLLI+C GCTKGGLF NIHVPGHFVFRT
Sbjct: 61 WKEFCHARAPKMMLDLHSGGSHIVDGNWKALGKLLIYCNGCTKGGLFNNIHVPGHFVFRT 120
Query: 121 RFSRTCGKSILPPQCRTDVLYVSDPCEHLDQGEEGDLGFFRGIFKSFASSKVKKMLIEKQ 180
RFSRT GKS LP QCR DVLYVSDPCEHLDQG+EGDLGFFRGIF SFA+SKVKKMLIEK+
Sbjct: 121 RFSRTAGKSFLPQQCRNDVLYVSDPCEHLDQGDEGDLGFFRGIFMSFATSKVKKMLIEKR 180
Query: 181 AKFHPKEVCPYCKAKLWNLLQANMIPRSASIRLDAYDDSVEYYICLNGHILGLCTLMPVS 240
A+FHP E CPYCKAKLW++L+ANM P S+S RL AY+DSVEY++CLNGH++G+ TL+P+S
Sbjct: 181 ARFHPSESCPYCKAKLWSMLEANMSPGSSSARLGAYEDSVEYFVCLNGHVIGIGTLLPLS 240
Query: 241 DSEDAKE 247
DSE+ E
Sbjct: 241 DSEEVPE 247
>Os01g0802600 Similar to Circadian clock coupling factor ZGT
Length = 301
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 141/230 (61%), Gaps = 13/230 (5%)
Query: 21 GHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKRVLWKEFCHARAPRMMQDLHSGG 80
G + E L LVFR +NW+P+ + +CVS+ +A+RVLW+E C +RAPRM+ L G
Sbjct: 50 GILDEHVLSLVFRSINWDPQAVCTAACVSRRMRAVAERVLWRELCISRAPRMVASLAGAG 109
Query: 81 SHI-------VDGNWKALGKLLIHCAGCTKGGLFGNIHVPGHFVFRTRFSRTCGKSILPP 133
+ + G W AL K+L C G G VPGHF +RFS+T G+S L
Sbjct: 110 AGGAAPPPGRIVGGWPALAKMLFFCCGAAGPG------VPGHFTRMSRFSKTSGRSFLSR 163
Query: 134 QCRTDVLYVSDPCEHLDQGEEGDLGFFRGIFKSFASSKVKKMLIEKQAKFHPKEVCPYCK 193
+CR+D+LYVSDPCEH G DLG +RG+F+ F S+ + L+ +QA P+ CPYC
Sbjct: 164 RCRSDLLYVSDPCEHAVAGAGDDLGAYRGVFRGFMRSRTRACLVGRQAALDPRVRCPYCG 223
Query: 194 AKLWNLLQANMIPRSASIRLDAYDDSVEYYICLNGHILGLCTLMPVSDSE 243
A++W+++ A M+PR+A RL + +EYY+C++GH+ G C L ++ SE
Sbjct: 224 ARVWSMVAAGMVPRTAWRRLGCLEGRLEYYVCVSGHLHGNCWLARLTSSE 273
>Os05g0494600 Conserved hypothetical protein
Length = 307
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 14/224 (6%)
Query: 21 GHISEDALFLVFRHMNWNPRMIALFSCVSKWFDDIAKRVLWKEFCHARAPRMMQDLHSGG 80
G + E L LVFR +NW+PR + + + VS+ +A+RVLW+E C +RAPRM+ L
Sbjct: 36 GIMDEKVLELVFRALNWDPRELCVVARVSRRLRAVAERVLWRELCVSRAPRMVSALSGPT 95
Query: 81 SHIVDGN------WKALGKLLIHCAGCTKGGLFGNIHVPGHFVFRTRFSRTCGKSILPPQ 134
+ + W A+ KLL C G VPGHF +RFS+T G+S L +
Sbjct: 96 AAVAAAAGRIGGGWPAMAKLLFFCCGAA------GAAVPGHFAPVSRFSKTSGRSFLSRR 149
Query: 135 CRTDVLYVSDPCEHLDQGEEGD--LGFFRGIFKSFASSKVKKMLIEKQAKFHPKEVCPYC 192
C D+L+VSDPCEH D +G +RG+++ F S+ + L+ +A P+ CPYC
Sbjct: 150 CAGDLLFVSDPCEHAAGAASDDDVVGAYRGVYRGFMRSRTRAFLVGHRAPLEPRVRCPYC 209
Query: 193 KAKLWNLLQANMIPRSASIRLDAYDDSVEYYICLNGHILGLCTL 236
A++W++ A + PRSA L A + +EY++C++GH+ G C L
Sbjct: 210 GARVWSMTAAGLAPRSACRWLGANEGRLEYFVCVSGHLHGSCWL 253
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.140 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,348,051
Number of extensions: 385622
Number of successful extensions: 878
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 4
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)