BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0387800 Os03g0387800|AK060532
         (290 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0387800  Conserved hypothetical protein                      540   e-154
Os07g0623600  Conserved hypothetical protein                      388   e-108
Os02g0574600  Conserved hypothetical protein                      238   4e-63
Os04g0455600  Conserved hypothetical protein                      236   1e-62

>Os03g0387800 Conserved hypothetical protein
          Length = 290

 Score =  540 bits (1391), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/290 (92%), Positives = 268/290 (92%)

Query: 1   MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQVTEE 60
           MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQVTEE
Sbjct: 1   MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQVTEE 60

Query: 61  EAESLNKRKPCSAPKWKEMTGSGIFXXXXXXXXXXXXXXXXXXXXXXRNYQPVTVSHISF 120
           EAESLNKRKPCSAPKWKEMTGSGIF                      RNYQPVTVSHISF
Sbjct: 61  EAESLNKRKPCSAPKWKEMTGSGIFAAGADGEAEEPGSAAAPGRAAPRNYQPVTVSHISF 120

Query: 121 AEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDPQDVRP 180
           AEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDPQDVRP
Sbjct: 121 AEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDPQDVRP 180

Query: 181 NGARNTANGTGASHTPVRNANVSSFSFGEANTDSVTKTAKKITGKKFTDLTGNNIFKGDE 240
           NGARNTANGTGASHTPVRNANVSSFSFGEANTDSVTKTAKKITGKKFTDLTGNNIFKGDE
Sbjct: 181 NGARNTANGTGASHTPVRNANVSSFSFGEANTDSVTKTAKKITGKKFTDLTGNNIFKGDE 240

Query: 241 APASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGNRKPPGGESSIALV 290
           APASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGNRKPPGGESSIALV
Sbjct: 241 APASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGNRKPPGGESSIALV 290



>Os07g0623600 Conserved hypothetical protein
          Length = 288

 Score =  388 bits (997), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/293 (69%), Positives = 231/293 (78%), Gaps = 8/293 (2%)

Query: 1   MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQVTEE 60
           MERPAPVRKSHTSTADLL WP+   Q +  A +TP P RRPHQPSEA+ KVVFGGQVTEE
Sbjct: 1   MERPAPVRKSHTSTADLLTWPEGAAQ-ELAAGATPPPNRRPHQPSEAISKVVFGGQVTEE 59

Query: 61  EAESLNKRKPCSAPKWKEMTGSGIFXXXXXXXXXXXXXXXXX-XXXXXRNYQPV-TVSHI 118
           E ESLNKRKPCSAPKWKEMTGSGIF                       +NYQ + T+SHI
Sbjct: 60  EFESLNKRKPCSAPKWKEMTGSGIFAAEGEVEEDESANASATPVRTVSKNYQAISTISHI 119

Query: 119 SFAEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDP-QD 177
           SFAE+ SV PKKPTS+AEVAKQRELSGTLQSE +SKMK+QISNAKSKELSGH +F P +D
Sbjct: 120 SFAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIFAPPED 179

Query: 178 VRPNGARNTANGTGASHTPVRNANVSSFSFGEANTDSVTKTAKKITGKKFTDLTGNNIFK 237
            RP   RN+ANG+  S TP +NA VS+ +FGEA+TDSV KTAKKI  KK TDLTGN+IFK
Sbjct: 180 PRP---RNSANGS-TSQTPGKNAQVSTITFGEADTDSVVKTAKKIPEKKLTDLTGNDIFK 235

Query: 238 GDEAPASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGNRKPPGGESSIALV 290
           GD AP +AEKHLSTAKLKEMTGS+IFA+G+AP+R+Y  G RKPPGGESSIALV
Sbjct: 236 GDAAPGTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLGGIRKPPGGESSIALV 288



>Os02g0574600 Conserved hypothetical protein
          Length = 310

 Score =  238 bits (607), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 155/313 (49%), Positives = 186/313 (59%), Gaps = 26/313 (8%)

Query: 1   MERPAPVRKSHTSTADLLAW---PQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQV 57
           MER  PVRK+H STA LL+W   P   +      A+ P  +R   +P+  +   +FG  V
Sbjct: 1   MERAVPVRKTHASTAGLLSWSESPGPDNAAAAAGAAAPPSSRPSLKPAGGITPAMFGAPV 60

Query: 58  TEEEAESLNKRKPCSAPKWKEMTGSGIFXXXXXXXXXXXXXXXXX--XXXXXRNYQPVT- 114
           T+ EAE L KRK CS  K KEMTGSGIF                        R YQ    
Sbjct: 61  TDLEAEDLTKRKMCSGSKMKEMTGSGIFSAQGANGDSETGSGDSNPPSKTSLRMYQQTVT 120

Query: 115 -VSHISFAEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLF 173
            +S ISF+ +GSV PKKP+S+ EVAKQRELSGTL+SEAD+K+KKQ S AKSKELSG  +F
Sbjct: 121 GISQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKLKKQNSEAKSKELSGSDIF 180

Query: 174 DPQD---VRPNGARNT---ANGTGA------SHTPVRNANV----SSFSFGEANTDSVTK 217
            P      RP  ARN     N   A       HT V+ +N     S+  FGE   +   K
Sbjct: 181 GPPPEIPSRPLAARNLELQGNLDFALPQPRSIHTSVKVSNPAGGPSNIMFGE---EPAVK 237

Query: 218 TAKKITGKKFTDLTGNNIFKGDEAPASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGN 277
           TAKKI  +KF +LTGNNIFK +  P SAEK LSTAKLKEM+GSNIFA+G+  +R+Y  G 
Sbjct: 238 TAKKIHNQKFHELTGNNIFKEEAPPGSAEKSLSTAKLKEMSGSNIFADGKVASRDYFGGV 297

Query: 278 RKPPGGESSIALV 290
           RKPPGG SSIALV
Sbjct: 298 RKPPGGGSSIALV 310



>Os04g0455600 Conserved hypothetical protein
          Length = 305

 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 155/310 (50%), Positives = 188/310 (60%), Gaps = 25/310 (8%)

Query: 1   MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQVTEE 60
           MER  PVRK HTSTADLL W          AAS  + +R   +P+  +   +FG  V+E+
Sbjct: 1   MERAVPVRKPHTSTADLLTWSATGPDAAAAAASPVASSRPSLKPAGGITPAMFGAPVSEK 60

Query: 61  EAESLNK--RKPCSAPKWKEMTGSGIFXXXXXXXXXXXXXXXXXXXXXXRNYQPVT--VS 116
           EAE L+K  RK CS  K KEMTGSGIF                      R YQ     +S
Sbjct: 61  EAEDLSKSERKFCSGSKLKEMTGSGIFAENSENDDSEASNPANKTSV--RMYQQTVTGIS 118

Query: 117 HISFAEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDPQ 176
            ISF+ DGSV PKKP+S+ EVAKQRELSGTL+++A++KM KQ S AKSKELSG  +F P 
Sbjct: 119 QISFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEAKMNKQHSEAKSKELSGSDIFGPP 178

Query: 177 D---VRPNGARNT---ANGTGA------SHTPVRNANV----SSFSFGEANTDSVTKTAK 220
                RP  ARN     N   A       HT V+ +N     S+ +F E   + V KT+K
Sbjct: 179 PEIPARPLAARNMELQGNLDFALPQPRSVHTSVKVSNPAGGPSNITFSE---EPVVKTSK 235

Query: 221 KITGKKFTDLTGNNIFKGDEAPASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGNRKP 280
           KI  +KF +LTGNNIFK D  PASAEK LS+AKLKEM+GS+IFA+G A  R+Y  G RKP
Sbjct: 236 KIHNQKFQELTGNNIFKEDATPASAEKSLSSAKLKEMSGSDIFADGAAAPRDYLGGVRKP 295

Query: 281 PGGESSIALV 290
           PGGESSIAL+
Sbjct: 296 PGGESSIALI 305



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.123    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,332,115
Number of extensions: 426010
Number of successful extensions: 1401
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1369
Number of HSP's successfully gapped: 4
Length of query: 290
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 190
Effective length of database: 11,814,401
Effective search space: 2244736190
Effective search space used: 2244736190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 155 (64.3 bits)