BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0376900 Os03g0376900|AK101213
(464 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0376900 RNA-binding region RNP-1 (RNA recognition moti... 775 0.0
Os08g0436000 RNA-binding region RNP-1 (RNA recognition moti... 590 e-168
Os01g0619000 Nucleotide-binding, alpha-beta plait domain co... 304 1e-82
Os05g0437300 HnRNP-L/PTB/hephaestus splicing factor family ... 147 2e-35
Os01g0867800 HnRNP-L/PTB/hephaestus splicing factor family ... 142 4e-34
>Os03g0376900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 464
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/436 (87%), Positives = 382/436 (87%)
Query: 1 MSSSVXXXXXXXFRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQ 60
MSSSV FRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQ
Sbjct: 1 MSSSVGGGGGQQFRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQ 60
Query: 61 AFVEFTDINQAISMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTI 120
AFVEFTDINQAISMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTI
Sbjct: 61 AFVEFTDINQAISMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTI 120
Query: 121 EGVQANDVTIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDXXXXXXXXXXLDGRSIP 180
EGVQANDVTIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTD LDGRSIP
Sbjct: 121 EGVQANDVTIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIP 180
Query: 181 RYLLPEHVTSCCLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDTLQPAVGADGRK 240
RYLLPEHVTSCCLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDTLQPAVGADGRK
Sbjct: 181 RYLLPEHVTSCCLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDTLQPAVGADGRK 240
Query: 241 VEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASV 300
VEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASV
Sbjct: 241 VEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASV 300
Query: 301 AKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDKSRDYTIPQGAMQAVPQPPGVPTTS 360
AKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDKSRDYTIPQGAMQAVPQPPGVPTTS
Sbjct: 301 AKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDKSRDYTIPQGAMQAVPQPPGVPTTS 360
Query: 361 AGWXXXXXXXXXXXXXXXXXXXXXXXXQVPNWNPGNSGYAPAPGAYPGQMYSSPMQYXXX 420
AGW QVPNWNPGNSGYAPAPGAYPGQMYSSPMQY
Sbjct: 361 AGWQGNPQAGGAYAPPGAAAPNHGTTGQVPNWNPGNSGYAPAPGAYPGQMYSSPMQYGAS 420
Query: 421 XXXXXXXXXXQELHTS 436
QELHTS
Sbjct: 421 GGFSAPAAPPQELHTS 436
>Os08g0436000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 461
Score = 590 bits (1520), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/403 (72%), Positives = 318/403 (78%), Gaps = 10/403 (2%)
Query: 13 FRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAI 72
FRYTQTPSKVLHLRN+PWEC EEELVELC PFGR+VNT C VGANRNQAFVEF D NQAI
Sbjct: 9 FRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQAI 68
Query: 73 SMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTIEGVQANDVTIDV 132
SMVSY+ASSSEPAQ+RGKTVYIQYSNRQEI NNK G+++GNVLLVT EGVQ ND++IDV
Sbjct: 69 SMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPNDISIDV 128
Query: 133 IHLVFSAFGFVHKIATFEKAAGFQALIQYTDXXXXXXXXXXLDGRSIPRYLLPEHVTSCC 192
IHLVFSAFGFVHKIATFEKAAGFQALIQYTD LDGRSIPRYLLPEHV +C
Sbjct: 129 IHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLPEHVPTCH 188
Query: 193 LRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDTL-QPAVGADGRKVEAEGNVLLAS 251
LRI+FSAHKDLNIKFQSHRSRDYTNPYLPVN +AI+ + QP +G DG+ E E NVLLAS
Sbjct: 189 LRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQPTLGPDGKIKEPESNVLLAS 248
Query: 252 IENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIY 311
IENMQYAVTVDVLHTVFSAFGTVQKIA+FEKNGG QALIQYPD+TTA+VAK+ALEGHCIY
Sbjct: 249 IENMQYAVTVDVLHTVFSAFGTVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEGHCIY 308
Query: 312 DGGYCKLHLSYSRHTDLNVKAHSDKSRDYTI---PQGAMQAVPQPPGVPTTSAGWXXXXX 368
DGGYCKLHLSYSRHTDLNVKAH ++SRDYT+ P MQA Q PG T W
Sbjct: 309 DGGYCKLHLSYSRHTDLNVKAHDERSRDYTVSSDPSAQMQAAAQAPGPSTPGVAW----Q 364
Query: 369 XXXXXXXXXXXXXXXXXXXQVPNWNPG--NSGYAPAPGAYPGQ 409
QVP WNP + A AYP Q
Sbjct: 365 NTAPSASFYGSTAAATPVGQVPAWNPNMQAGAFGSASSAYPTQ 407
>Os01g0619000 Nucleotide-binding, alpha-beta plait domain containing protein
Length = 448
Score = 304 bits (778), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 146/206 (70%), Positives = 163/206 (79%), Gaps = 4/206 (1%)
Query: 136 VFSAFGFVHKIATFEKAAGFQALIQYTDXXXXXXXXXXLDGRSIPRYLLPEHVTSCCLRI 195
VFSAFGFV KIATFEKA+G+QALIQ+ D LDGR IP YLLPE C LRI
Sbjct: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
Query: 196 SFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDTLQPAVGADGRKVEAEGNVLLASIENM 255
++SAH LN+KFQSHRSRDYTNPYLPV SAID G DG+K EAE NVLLAS+ENM
Sbjct: 85 NYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAID----GSGPDGKKQEAESNVLLASVENM 140
Query: 256 QYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIYDGGY 315
QY VT+DVLH VFSAFG VQKIAIFEKN G QALIQYPD+ TA AKEALEGH IY+GGY
Sbjct: 141 QYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGGY 200
Query: 316 CKLHLSYSRHTDLNVKAHSDKSRDYT 341
CKLHL++SRHTDLNVK ++++ RDYT
Sbjct: 201 CKLHLTFSRHTDLNVKVNNERGRDYT 226
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Query: 110 ETAGNVLLVTIEGVQANDVTIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDXXXXXX 169
E NVLL ++E +Q VTIDV+H VFSAFGFV KIA FEK +GFQALIQY D
Sbjct: 127 EAESNVLLASVENMQYV-VTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVA 185
Query: 170 XXXXLDGRSIPRYLLPEHVTSCCLRISFSAHKDLNIKFQSHRSRDYTN 217
L+G SI C L ++FS H DLN+K + R RDYT
Sbjct: 186 AKEALEGHSI------YEGGYCKLHLTFSRHTDLNVKVNNERGRDYTG 227
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 54/85 (63%), Gaps = 10/85 (11%)
Query: 267 VFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIYDGGY--------CKL 318
VFSAFG VQKIA FEK G QALIQ+ D TAS AK AL+G CI Y C L
Sbjct: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPS--YLLPELDVPCTL 82
Query: 319 HLSYSRHTDLNVKAHSDKSRDYTIP 343
++YS HT LNVK S +SRDYT P
Sbjct: 83 RINYSAHTVLNVKFQSHRSRDYTNP 107
>Os05g0437300 HnRNP-L/PTB/hephaestus splicing factor family protein
Length = 444
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 183/367 (49%), Gaps = 70/367 (19%)
Query: 19 PSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAISMVSYF 78
PSKV+H+RN+ E AE +L++L PFG + +K + +NQA ++ D++ ++S + Y+
Sbjct: 4 PSKVIHIRNVGHEIAEADLLQLLQPFGNV--SKIVMLRAKNQALLQMQDLHNSVSALQYY 61
Query: 79 ASSSEPAQIRGKTVYIQYSNRQEIVNNK------SPGETAGN-VLLVTIEGVQANDVTID 131
S+ +P+ +RG+ VY+Q+S+ QE+ ++ S E+ N +LLVTI + +T++
Sbjct: 62 -STVQPS-VRGRNVYMQFSSHQELTTDQNSHGRNSDQESEPNRILLVTIHHMMY-PITVE 118
Query: 132 VIHLVFSAFGFVHKIATFEKAAGFQALIQYTDXXXXXXXXXXLDGRSIPRYLLPEHVTSC 191
V+H VF A+G+V KI TF+K+AGFQALIQY L GR+I C
Sbjct: 119 VLHQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHGRNI--------YDGC 170
Query: 192 C-LRISFSAHKDLNIKFQSHRSRDYTNPYLP----------------------------- 221
C L I +S +L + + + RSRD+TNP LP
Sbjct: 171 CQLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYPDPGGLYAFQQPGASYA 230
Query: 222 -------VNSSAIDTLQPAVGADGRKVEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTV 274
+ ++ TL P V + L+ S N + D L +FS +G +
Sbjct: 231 QMGRAAMITAAFGGTLPPGVTGTNERC-----TLIVSNLNTD-KINEDKLFNLFSLYGNI 284
Query: 275 QKIAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHS 334
+I I +N AL++ D A +A L+G ++ KL ++YS++ N+ +
Sbjct: 285 VRIKIL-RNKPDHALVEMADGFQAELAVHYLKGAVLFAK---KLEVNYSKYP--NITSAP 338
Query: 335 DKSRDYT 341
D + DYT
Sbjct: 339 D-AHDYT 344
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 10/149 (6%)
Query: 217 NPYLPVNS-SAIDTLQPAVGADGRKVEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQ 275
N Y+ +S + T Q + G + + +LL +I +M Y +TV+VLH VF A+G V+
Sbjct: 72 NVYMQFSSHQELTTDQNSHGRNSDQESEPNRILLVTIHHMMYPITVEVLHQVFKAYGYVE 131
Query: 276 KIAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSD 335
KI F+K+ G QALIQY + A A AL G IYDG C+L + YS ++L V ++D
Sbjct: 132 KIVTFQKSAGFQALIQYQSLQEAMDAFGALHGRNIYDGC-CQLDIQYSNLSELQVHYNND 190
Query: 336 KSRDYT--------IPQGAMQAVPQPPGV 356
+SRD+T P+ + Q P P G+
Sbjct: 191 RSRDFTNPSLPTEQRPRASQQGYPDPGGL 219
>Os01g0867800 HnRNP-L/PTB/hephaestus splicing factor family protein
Length = 439
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 115/360 (31%), Positives = 175/360 (48%), Gaps = 61/360 (16%)
Query: 19 PSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAISMVSYF 78
PSKV+H+RN+ E +E EL+++ PFG + K + +NQ D+ A++++ Y+
Sbjct: 4 PSKVIHIRNVGHEISESELLQVVQPFGTVA--KLVMLRAKNQ----MEDLASAVNVIQYY 57
Query: 79 ASSSEPAQIRGKTVYIQYSNRQEIVNNKSP------GETAGNVLLVTIEGVQANDVTIDV 132
++ +P+ +RG+ VY+QYS+ QE+ ++S E +LLVTI + +TI+V
Sbjct: 58 -NTIQPS-VRGRNVYLQYSSHQELTTDQSSHGRNPDQEEPNRILLVTIHHM-LYPITIEV 114
Query: 133 IHLVFSAFGFVHKIATFEKAAGFQALIQYTDXXXXXXXXXXLDGRSIPRYLLPEHVTSCC 192
+H VFS +GFV KI TF+K+AGFQ LIQY L GR+I CC
Sbjct: 115 LHQVFSPYGFVEKIVTFQKSAGFQTLIQYQSRQSAIQAYGALHGRNI--------YDGCC 166
Query: 193 -LRISFSAHKDLNIKFQSHRSRDYTNPYLPVN-------------SSAIDTLQPA----- 233
L I +S +L + + + RSRD+TNP LP SS QP
Sbjct: 167 QLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRSRSSQPSYNDPSSLFGFQQPGDPYAQ 226
Query: 234 VGADGRKVEAEGNVLLASIENMQYAVTV------------DVLHTVFSAFGTVQKIAIFE 281
+ A G L + + T+ D L +FS +G + +I I
Sbjct: 227 MSKAAMIAAAFGGTLPPGVSGINDRCTLLVSNLNTDKIDEDKLFNLFSMYGNIVRIKIL- 285
Query: 282 KNGGTQALIQYPDVTTASVAKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDKSRDYT 341
KN ALIQ D A +A L+G ++ KL ++YS++ V A D +RDY+
Sbjct: 286 KNKPDHALIQMADGLQAELAVLYLKGAMLFGK---KLEVNYSKYP--TVTADPD-ARDYS 339
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 242 EAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASVA 301
E +LL +I +M Y +T++VLH VFS +G V+KI F+K+ G Q LIQY +A A
Sbjct: 93 EEPNRILLVTIHHMLYPITIEVLHQVFSPYGFVEKIVTFQKSAGFQTLIQYQSRQSAIQA 152
Query: 302 KEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDKSRDYTIP 343
AL G IYDG C+L + YS ++L V ++D+SRD+T P
Sbjct: 153 YGALHGRNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFTNP 193
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,075,370
Number of extensions: 485264
Number of successful extensions: 1184
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1159
Number of HSP's successfully gapped: 9
Length of query: 464
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 360
Effective length of database: 11,605,545
Effective search space: 4177996200
Effective search space used: 4177996200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)