Os05g0437300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HnRNP-L/PTB/hephaestus splicing factor family protein.
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Os05g0437300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HnRNP-L/PTB/hephaestus splicing factor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.05 | 0.17 | 12.4 | 0.24 | 0.656 | 0.474 | 0.0211 | -0.592 | 0.253 | 21.5 | 21.2 | 4130 | -- | -- |
| 13.56 | 0.171 | 12.3 | 0.372 | 0.655 | 0.55 | 0.0132 | -- | 0.285 | 21.5 | 21.13 | 4137 | -- | -- |
| 13.05 | 0.168 | 12.4 | 0.24 | 0.655 | 0.473 | -- | -0.588 | 0.254 | 21.5 | 21.19 | 4109 | -- | -- |
| 13.56 | 0.171 | 12.3 | 0.37 | 0.655 | 0.55 | -- | -- | 0.285 | 21.5 | 21.17 | 4137 | -- | -- |
| 37.37 | 0.285 | 12.3 | 0.25 | -- | 0.553 | -- | -0.451 | 0.243 | -- | 21.1 | 3680 | -- | -- |
| 20.32 | 0.211 | 12.3 | 0.704 | 0.664 | -- | 0.0318 | -- | 0.46 | 21.6 | -- | -- | -- | -- |
| 20.32 | 0.211 | 12.3 | 0.703 | 0.663 | -- | -- | -- | 0.46 | 21.6 | -- | -- | -- | -- |
| 37.7 | 0.286 | 12.3 | 0.349 | -- | 0.608 | -- | -- | 0.265 | -- | 21.1 | 3688 | -- | -- |
| 13.16 | 0.169 | 12.4 | -- | 0.664 | 0.743 | -- | -- | 0.226 | 21.5 | 18.46 | 24271 | -- | -- |
| 46.35 | 0.318 | 12.3 | 0.708 | -- | -- | -- | -- | 0.458 | -- | -- | -- | -- | -- |
| 33.35 | 0.27 | 12.3 | -- | 0.665 | -- | -- | -- | 0.381 | 21.7 | -- | -- | -- | -- |
| 38.45 | 0.289 | 12.3 | -- | -- | 0.75 | -- | -- | 0.198 | -- | 18.3 | 23885 | -- | -- |
| 59.58 | 0.36 | 12.3 | -- | -- | -- | -- | -- | 0.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.39 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 2 | 12.54 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 6 | 12.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 8 | 12.68 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 16 | 12.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 13 |
| 20 | 12.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 37 | 12.77 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 38 | 12.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 45 | 12.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 54 | 12.80 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 62 | 12.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 82 | 12.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 132 | 12.90 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 149 | 12.94 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 219 | 13.03 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 254 | 13.07 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 272 | 13.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 288 | 13.12 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 289 | 13.12 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 295 | 13.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 320 | 13.14 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 364 | 13.17 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 365 | 13.17 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 385 | 13.18 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 434 | 13.20 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 451 | 13.21 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 462 | 13.21 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 463 | 13.21 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 464 | 13.22 | radiation | 20 | 43200 | < th | dose independent | sin | 8 | NA |
| 472 | 13.22 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 484 | 13.23 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 509 | 13.23 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 530 | 13.24 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 546 | 13.25 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 549 | 13.25 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 568 | 13.25 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 578 | 13.25 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 599 | 13.25 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 609 | 13.25 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 610 | 13.25 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 796 | 13.28 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 13 | NA |
| 883 | 13.29 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 13 | NA |
| 976 | 13.29 | radiation | 20 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 979 | 13.29 | radiation | 20 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 997 | 13.30 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 998 | 13.30 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |