BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0437300 Os05g0437300|AK102760
(444 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43190.1 | chr1:16275432-16278185 REVERSE LENGTH=433 663 0.0
AT3G01150.1 | chr3:51732-54344 FORWARD LENGTH=400 155 3e-38
AT5G53180.1 | chr5:21568393-21571537 REVERSE LENGTH=430 145 4e-35
>AT1G43190.1 | chr1:16275432-16278185 REVERSE LENGTH=433
Length = 432
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/445 (71%), Positives = 378/445 (84%), Gaps = 14/445 (3%)
Query: 1 MAEPSKVIHIRNVGHEIAEADLLQLLQPFGNVSKIVMLRAKNQALLQMQDLHNSVSALQY 60
MAE SKV+H+RNVGHEI+E DLLQL QPFG ++K+VMLRAKNQALLQMQD+ ++VSALQ+
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 61 YSTVQPSVRGRNVYMQFSSHQELTT-DQNSHGRNSDQESEPNRILLVTIHHMMYPITVEV 119
++ VQP++RGRNVY+QFSSHQELTT +QN HGR E EPNRILLVTIHHM+YPITV+V
Sbjct: 61 FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGR----EDEPNRILLVTIHHMLYPITVDV 116
Query: 120 LHQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHGRNIYDGCCQLDIQYSN 179
LHQVF YG+VEK+VTFQKSAGFQALIQYQ Q A A AL GRNIYDGCCQLDIQ+SN
Sbjct: 117 LHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSN 176
Query: 180 LSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYPDPGGLYAFQQPGASYAQMGRAAMIT 239
L ELQV+YNNDRSRD+TNP+LP EQ+ R+S Y D G +Y QM + I
Sbjct: 177 LEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTG---------VAYPQMANTSAIA 227
Query: 240 AAFGGTLPPGVTGTNERCTLIVSNLNTDKINEDKLFNLFSLYGNIVRIKILRNKPDHALV 299
AAFGG LPPG+TGTN+RCT++VSNLN D I+EDKLFNLFSLYGNIVRIK+LRNKPDHALV
Sbjct: 228 AAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALV 287
Query: 300 EMADGFQAELAVHYLKGAVLFAKKLEVNYSKYPNITSAPDAHDYTTSSLNRFNSNVIKNY 359
+M DGFQAELAVH+LKGA+LF K+LEVN+SK+PNIT D+HDY S+LNRFN N KNY
Sbjct: 288 QMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNY 347
Query: 360 RHCCAPTKMIHISALPQEITEDAILNHVSEHGSVVNTKLFEVNGKRQALIQFESEEEATE 419
R+CC+PTKMIH+S LPQ++TE+ ++NHV EHG+VVNTK+FE+NGK+QAL+QFE+EEEA E
Sbjct: 348 RYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAE 407
Query: 420 ALVSKHATSLEGNTIRISFSQMQSI 444
ALV KHATSL G+ IRISFSQ+Q+I
Sbjct: 408 ALVCKHATSLGGSIIRISFSQLQTI 432
>AT3G01150.1 | chr3:51732-54344 FORWARD LENGTH=400
Length = 399
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 189/372 (50%), Gaps = 69/372 (18%)
Query: 4 PSKVIHIRNVGHEIAEADLLQLLQPFGNV--SKIVMLRAKNQALLQMQDLHNSVSALQYY 61
PSKV+H+RN+ E E +L+ L + FG + +K + +NQA ++ DL+ ++S + YY
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 -STVQPS-VRGRNVYMQFSSHQELTTDQNSHGRNSDQESEPNRILLVTIHHM-MYPITVE 118
S+ +P+ +RG+ VY+Q+S+ E+ +Q+ P +LLVT + + ++++
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIVNNQSPG-------DVPGNVLLVTFEGVESHEVSID 127
Query: 119 VLHQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHGRNI-------YDGCC 171
V+H VF A+G+V KI TF+K+AGFQAL+Q+ ++ A A AL GR+I + G C
Sbjct: 128 VIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSC 187
Query: 172 QLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYPDPGGLYAFQQPGASYAQ 231
L + YS ++L + + + RSRD+TNP LP Q
Sbjct: 188 SLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQ--------------------------- 220
Query: 232 MGRAAMITAAFGGTLPPGVTGTNERCTL-------IVSNLNTDKINEDKLFNLFSLYGNI 284
A G++ P + ++ ++ N+ + D L +FS YG +
Sbjct: 221 --------TAMDGSMQPALGADGKKVESQSNVLLGLIENMQY-AVTVDVLHTVFSAYGTV 271
Query: 285 VRIKIL-RNKPDHALVEMADGFQAELAVHYLKGAVLFAK---KLEVNYSKYP--NITSAP 338
+I I +N AL++ +D A +A L+G ++ KL ++YS++ N+ +
Sbjct: 272 QKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFS 331
Query: 339 D-AHDYTTSSLN 349
D + DYT L+
Sbjct: 332 DKSRDYTLPDLS 343
>AT5G53180.1 | chr5:21568393-21571537 REVERSE LENGTH=430
Length = 429
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 181/352 (51%), Gaps = 60/352 (17%)
Query: 4 PSKVIHIRNVGHEIAEADLLQLLQPFGNV--SKIVMLRAKNQALLQMQDLHNSVSALQYY 61
PSKV+H+RN+ E E +L++L +PFG V +K + +NQA ++ +DL+ ++ + YY
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYY 75
Query: 62 -STVQPS-VRGRNVYMQFSSHQELTTDQNSHGRNSDQESEPNRILLVTIH-HMMYPITVE 118
S+ +P+ VRG+ VY+Q+S+ QE+ ++ + +LLVTI ++++
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT-------ADVVGNVLLVTIEGDDARMVSID 128
Query: 119 VLHQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHGRNIYD-------GCC 171
VLH VF A+G+V KI TF+K+AG+QAL+Q+ + A A AL GR+I G C
Sbjct: 129 VLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQC 188
Query: 172 QLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYPDPGGLYAFQQPGASYAQ 231
L I YS ++L V + + RSRD+TNP LP P A
Sbjct: 189 SLKITYSAHTDLTVKFQSHRSRDYTNPYLPVA--PSAID--------------------S 226
Query: 232 MGRAAMITAAFGGTLPPGVTGTN---ERCTLIVSNLNTD-KINEDKLFNLFSLYGNIVRI 287
G+ A+ GV G E L+ S N + D L +F+ +G + +I
Sbjct: 227 TGQVAV-----------GVDGKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKI 275
Query: 288 KIL-RNKPDHALVEMADGFQAELAVHYLKGAVLFAK---KLEVNYSKYPNIT 335
+ +N AL++ +D A +A L+G ++ KL + YS++ +++
Sbjct: 276 AMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLS 327
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 110/214 (51%), Gaps = 40/214 (18%)
Query: 21 DLLQLL-QPFGNVSKIVMLR--AKNQALLQMQDLHNSVSA--------LQYYSTVQPSVR 69
D+L L+ FG V KI A QAL+Q D + +A + Y + +V
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAE-TVG 186
Query: 70 GRNVYMQFSSHQELTTDQNSHGRNSD-------------------------QESEP-NRI 103
++ + +S+H +LT SH R+ D ++ EP + +
Sbjct: 187 QCSLKITYSAHTDLTVKFQSH-RSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNV 245
Query: 104 LLVTIHHMMYPITVEVLHQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHG 163
LL +I +M Y +T++VLH VF A+G V+KI F K+ G QALIQY +Q A+ A AL G
Sbjct: 246 LLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEG 305
Query: 164 RNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFT 196
IYDG C+L I YS ++L + NNDRSRD+T
Sbjct: 306 HCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 339
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 359 YRHCCAPTKMIHISALPQEITEDAILNHVSEHGSVVNTKLFEVNGKRQALIQFESEEEAT 418
+R+ P+K++H+ LP E TE+ ++ G+VVNTK + QA I+FE +A
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
Query: 419 EALVSKHATSLE-----GNTIRISFSQMQSI 444
+ ++S +A+S E G T+ + +S Q I
Sbjct: 70 Q-MISYYASSSEPAQVRGKTVYLQYSNRQEI 99
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,261,497
Number of extensions: 382699
Number of successful extensions: 1175
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 8
Length of query: 444
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 342
Effective length of database: 8,310,137
Effective search space: 2842066854
Effective search space used: 2842066854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)