Os03g0376900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os03g0376900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.56 | 0.228 | 10.6 | 0.623 | 0.464 | 1.24 | 0.321 | -0.0299 | 0.424 | 1.09 | 31.33 | 263 | -- | -- |
| 23.56 | 0.226 | 10.6 | 0.619 | 0.461 | 1.24 | 0.318 | -- | 0.423 | 1.1 | 31.34 | 259 | -- | -- |
| 23.95 | 0.228 | 10.6 | 0.599 | 0.463 | 1.26 | -- | 0.131 | 0.419 | 1.04 | 31.39 | 258 | -- | -- |
| 23.97 | 0.228 | 10.6 | 0.608 | 0.459 | 1.26 | -- | -- | 0.419 | 1.07 | 31.47 | 259 | -- | -- |
| 31.2 | 0.26 | 10.6 | 0.652 | -- | 1.78 | -- | 0.235 | 0.454 | -- | 47.05 | 73 | -- | -- |
| 42.37 | 0.305 | 10.6 | 0.322 | 0.759 | -- | 0.462 | -- | 0.205 | 2.62 | -- | -- | -- | -- |
| 43.12 | 0.308 | 10.6 | 0.31 | 0.761 | -- | -- | -- | 0.202 | 2.62 | -- | -- | -- | -- |
| 31.26 | 0.26 | 10.6 | 0.682 | -- | 1.78 | -- | -- | 0.459 | -- | 58.85 | 65 | -- | -- |
| 32.9 | 0.267 | 10.6 | -- | 0.5 | 1.06 | -- | -- | 0.29 | 1.79 | 64.07 | 192 | -- | -- |
| 76.94 | 0.41 | 10.6 | 0.342 | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
| 45.65 | 0.316 | 10.7 | -- | 0.767 | -- | -- | -- | 0.167 | 2.63 | -- | -- | -- | -- |
| 42.55 | 0.305 | 10.6 | -- | -- | 1.56 | -- | -- | 0.36 | -- | 89.57 | 54 | -- | -- |
| 80.03 | 0.418 | 10.7 | -- | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.85 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 5 | 23.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 10 | 23.83 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 13 | 23.89 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 16 | 23.91 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 20 | 24.01 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 22 | 24.07 | temperature | 10.0 | 270 | > th | dose dependent | no | NA | NA |
| 29 | 24.22 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 56 | 24.71 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 60 | 24.76 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 88 | 25.05 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 92 | 25.09 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 95 | 25.11 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 105 | 25.19 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 114 | 25.25 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 116 | 25.25 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 137 | 25.34 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 155 | 25.42 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 158 | 25.43 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 231 | 25.64 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 291 | 25.75 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 306 | 25.78 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 322 | 25.82 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 374 | 25.94 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 377 | 25.96 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 380 | 25.97 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 424 | 26.05 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 427 | 26.05 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 474 | 26.14 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 486 | 26.17 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 15 |
| 496 | 26.19 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 524 | 26.23 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 539 | 26.24 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 548 | 26.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 558 | 26.26 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 650 | 26.36 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 756 | 26.50 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 757 | 26.50 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 760 | 26.50 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 772 | 26.51 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 809 | 26.55 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 944 | 26.70 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 962 | 26.72 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 11 |