BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0376900 Os03g0376900|AK101213
(464 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01150.1 | chr3:51732-54344 FORWARD LENGTH=400 572 e-163
AT5G53180.1 | chr5:21568393-21571537 REVERSE LENGTH=430 525 e-149
AT1G43190.1 | chr1:16275432-16278185 REVERSE LENGTH=433 152 5e-37
>AT3G01150.1 | chr3:51732-54344 FORWARD LENGTH=400
Length = 399
Score = 572 bits (1475), Expect = e-163, Method: Compositional matrix adjust.
Identities = 272/354 (76%), Positives = 307/354 (86%), Gaps = 3/354 (0%)
Query: 13 FRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAI 72
FRYTQTPSKV+HLRNLPWEC EEEL++LC FG+IVNTK VGANRNQAFVEF D+NQAI
Sbjct: 9 FRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAI 68
Query: 73 SMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTIEGVQANDVTIDV 132
SMVSY+ASSSEPAQIRGKTVYIQYSNR EIVNN+SPG+ GNVLLVT EGV++++V+IDV
Sbjct: 69 SMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVESHEVSIDV 128
Query: 133 IHLVFSAFGFVHKIATFEKAAGFQALIQYTDXXXXXXXXXXLDGRSIPRYLLPEHVTSCC 192
IHLVFSAFGFVHKIATFEKAAGFQAL+Q+TD LDGRSIPRYLL HV SC
Sbjct: 129 IHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCS 188
Query: 193 LRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAID-TLQPAVGADGRKVEAEGNVLLAS 251
LR+S+SAH DLNIKFQSHRSRDYTNPYLPVN +A+D ++QPA+GADG+KVE++ NVLL
Sbjct: 189 LRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLGL 248
Query: 252 IENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIY 311
IENMQYAVTVDVLHTVFSA+GTVQKIAIFEKNG TQALIQY D+ TA++AKEALEGHCIY
Sbjct: 249 IENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIY 308
Query: 312 DGGYCKLHLSYSRHTDLNVKAHSDKSRDYTIPQGAMQAVPQPPGVPTTS--AGW 363
DGGYCKL LSYSRHTDLNVKA SDKSRDYT+P ++ + P V ++ AGW
Sbjct: 309 DGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGW 362
>AT5G53180.1 | chr5:21568393-21571537 REVERSE LENGTH=430
Length = 429
Score = 525 bits (1353), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/330 (74%), Positives = 280/330 (84%), Gaps = 1/330 (0%)
Query: 13 FRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAI 72
FRYTQ PSKVLHLRNLPWEC EEEL+EL PFG +VNTKC VGANRNQAF+EF D+NQAI
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
Query: 73 SMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTIEGVQANDVTIDV 132
M+SY+ASSSEPAQ+RGKTVY+QYSNRQEIVNNK+ + GNVLLVTIEG A V+IDV
Sbjct: 70 QMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTIEGDDARMVSIDV 129
Query: 133 IHLVFSAFGFVHKIATFEKAAGFQALIQYTDXXXXXXXXXXLDGRSIPRYLLPEHVTSCC 192
+HLVFSAFGFVHKI TFEK AG+QAL+Q+TD LDGRSIPRYLL E V C
Sbjct: 130 LHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCS 189
Query: 193 LRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAID-TLQPAVGADGRKVEAEGNVLLAS 251
L+I++SAH DL +KFQSHRSRDYTNPYLPV SAID T Q AVG DG+K+E E NVLLAS
Sbjct: 190 LKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLAS 249
Query: 252 IENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIY 311
IENMQYAVT+DVLH VF+AFG VQKIA+F+KNGG QALIQY DV TA VAKEALEGHCIY
Sbjct: 250 IENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIY 309
Query: 312 DGGYCKLHLSYSRHTDLNVKAHSDKSRDYT 341
DGG+CKLH++YSRHTDL++K ++D+SRDYT
Sbjct: 310 DGGFCKLHITYSRHTDLSIKVNNDRSRDYT 339
>AT1G43190.1 | chr1:16275432-16278185 REVERSE LENGTH=433
Length = 432
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 112/342 (32%), Positives = 175/342 (51%), Gaps = 57/342 (16%)
Query: 20 SKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAISMVSYFA 79
SKV+H+RN+ E +E +L++L PFG I TK + +NQA ++ D++ A+S + +F
Sbjct: 5 SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVSSAVSALQFF- 61
Query: 80 SSSEPAQIRGKTVYIQYSNRQEIV----NNKSPGETAGNVLLVTIEGVQANDVTIDVIHL 135
++ +P IRG+ VY+Q+S+ QE+ N + +LLVTI + +T+DV+H
Sbjct: 62 TNVQPT-IRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQ 119
Query: 136 VFSAFGFVHKIATFEKAAGFQALIQYTDXXXXXXXXXXLDGRSIPRYLLPEHVTSCC-LR 194
VFS +GFV K+ TF+K+AGFQALIQY L GR+I CC L
Sbjct: 120 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNI--------YDGCCQLD 171
Query: 195 ISFSAHKDLNIKFQSHRSRDYTNPYLP----------------------VNSSAIDT--- 229
I FS ++L + + + RSRDYTNP LP N+SAI
Sbjct: 172 IQFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFG 231
Query: 230 --LQPAV-GADGRKVEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGT 286
L P + G + R N+ SI+ D L +FS +G + +I + +N
Sbjct: 232 GGLPPGITGTNDRCTVLVSNLNADSIDE-------DKLFNLFSLYGNIVRIKLL-RNKPD 283
Query: 287 QALIQYPDVTTASVAKEALEGHCIYDGGYCKLHLSYSRHTDL 328
AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 284 HALVQMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNI 322
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 70/106 (66%), Gaps = 2/106 (1%)
Query: 238 GRKVEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTT 297
GR+ E +LL +I +M Y +TVDVLH VFS +G V+K+ F+K+ G QALIQY
Sbjct: 92 GREDEP-NRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQC 150
Query: 298 ASVAKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDKSRDYTIP 343
A+ A+ AL+G IYDG C+L + +S +L V ++D+SRDYT P
Sbjct: 151 AASARTALQGRNIYDGC-CQLDIQFSNLEELQVNYNNDRSRDYTNP 195
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,321,391
Number of extensions: 312433
Number of successful extensions: 756
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 4
Length of query: 464
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 362
Effective length of database: 8,310,137
Effective search space: 3008269594
Effective search space used: 3008269594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)