Os01g0619000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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Os01g0619000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.35 | 0.232 | 10.8 | -0.381 | 0.332 | 0.536 | -0.00576 | 0.152 | -0.0891 | 12.4 | 15.3 | 10 | -- | -- |
| 24.36 | 0.23 | 10.8 | -0.404 | 0.331 | 0.523 | 0.024 | -- | -0.0955 | 12.4 | 16.22 | 12 | -- | -- |
| 24.35 | 0.23 | 10.8 | -0.382 | 0.332 | 0.532 | -- | 0.141 | -0.0893 | 12.4 | 15.42 | 10 | -- | -- |
| 24.36 | 0.23 | 10.8 | -0.401 | 0.332 | 0.51 | -- | -- | -0.0949 | 12.4 | 16.48 | 10 | -- | -- |
| 29.46 | 0.253 | 10.8 | -0.446 | -- | 0.878 | -- | 0.321 | -0.136 | -- | 15.39 | 7 | -- | -- |
| 27.27 | 0.245 | 10.7 | -0.299 | 0.478 | -- | 0.131 | -- | -0.0166 | 13 | -- | -- | -- | -- |
| 27.34 | 0.245 | 10.7 | -0.294 | 0.477 | -- | -- | -- | -0.016 | 13 | -- | -- | -- | -- |
| 29.29 | 0.252 | 10.8 | -0.47 | -- | 0.787 | -- | -- | -0.147 | -- | 17.7 | 4 | -- | -- |
| 28.14 | 0.247 | 10.7 | -- | 0.379 | 0.316 | -- | -- | -0.0293 | 12.7 | 18.61 | 5 | -- | -- |
| 41.52 | 0.301 | 10.8 | -0.312 | -- | -- | -- | -- | -0.0252 | -- | -- | -- | -- | -- |
| 29.62 | 0.255 | 10.7 | -- | 0.482 | -- | -- | -- | 0.0168 | 13 | -- | -- | -- | -- |
| 34.74 | 0.275 | 10.8 | -- | -- | 0.642 | -- | -- | -0.0795 | -- | 18.8 | 2 | -- | -- |
| 44.09 | 0.31 | 10.7 | -- | -- | -- | -- | -- | 0.0094 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.85 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 26 | 23.29 | temperature | 30 | 30 | < th | dose dependent | sin | 3 | NA |
| 47 | 23.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 62 | 23.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 17 |
| 67 | 23.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 94 | 23.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 106 | 23.83 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 17 |
| 198 | 24.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 210 | 24.05 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 225 | 24.10 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 14 |
| 254 | 24.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 260 | 24.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 263 | 24.15 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 289 | 24.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 317 | 24.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 10 |
| 318 | 24.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 323 | 24.23 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 340 | 24.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 344 | 24.25 | wind | 3 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 358 | 24.27 | wind | 3 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 359 | 24.27 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 7 |
| 420 | 24.34 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 430 | 24.35 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 435 | 24.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 436 | 24.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 446 | 24.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 450 | 24.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 465 | 24.37 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 483 | 24.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 508 | 24.40 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 14 | 17 |
| 529 | 24.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 14 |
| 555 | 24.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 556 | 24.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 594 | 24.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 595 | 24.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 642 | 24.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 695 | 24.46 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 697 | 24.46 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 722 | 24.47 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 743 | 24.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 810 | 24.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 837 | 24.51 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 871 | 24.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 921 | 24.53 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 11 | 19 |