BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0619000 Os01g0619000|AK068707
(448 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0619000 Nucleotide-binding, alpha-beta plait domain co... 780 0.0
Os08g0436000 RNA-binding region RNP-1 (RNA recognition moti... 314 9e-86
Os03g0376900 RNA-binding region RNP-1 (RNA recognition moti... 303 2e-82
Os01g0867800 HnRNP-L/PTB/hephaestus splicing factor family ... 103 2e-22
Os05g0437300 HnRNP-L/PTB/hephaestus splicing factor family ... 103 3e-22
>Os01g0619000 Nucleotide-binding, alpha-beta plait domain containing protein
Length = 448
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/448 (88%), Positives = 395/448 (88%)
Query: 1 MFYTCRPLSRSFMASWQATASGTHVFSAFGFVQKIATFEKASGYQALIQFCDTETASSAK 60
MFYTCRPLSRSFMASWQATASGTHVFSAFGFVQKIATFEKASGYQALIQFCDTETASSAK
Sbjct: 1 MFYTCRPLSRSFMASWQATASGTHVFSAFGFVQKIATFEKASGYQALIQFCDTETASSAK 60
Query: 61 AALDGRCIPSYLLPELDVPCTLRINYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGSG 120
AALDGRCIPSYLLPELDVPCTLRINYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGSG
Sbjct: 61 AALDGRCIPSYLLPELDVPCTLRINYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGSG 120
Query: 121 PDGKKQEAESNVLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDI 180
PDGKKQEAESNVLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDI
Sbjct: 121 PDGKKQEAESNVLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDI 180
Query: 181 QTAVAAKEALEGHSIYEGGYCKLHLTFSRHTDLNVKVNNERGRDYTGGNTAPTSNQPSIL 240
QTAVAAKEALEGHSIYEGGYCKLHLTFSRHTDLNVKVNNERGRDYTGGNTAPTSNQPSIL
Sbjct: 181 QTAVAAKEALEGHSIYEGGYCKLHLTFSRHTDLNVKVNNERGRDYTGGNTAPTSNQPSIL 240
Query: 241 GPQPVYSGAYNNAPSSAXXXXXXXXXXXXXXXXXSHPYTSSEPLPQTPAVPSGGAPLYTS 300
GPQPVYSGAYNNAPSSA SHPYTSSEPLPQTPAVPSGGAPLYTS
Sbjct: 241 GPQPVYSGAYNNAPSSATGAVVPPGTTLTPPGAPSHPYTSSEPLPQTPAVPSGGAPLYTS 300
Query: 301 QGILQGPPGVPPAQFPGYGSPQFPPGSAQAQMHQQHPVQGSQQMPGQMNHQPPPGSFMQY 360
QGILQGPPGVPPAQFPGYGSPQFPPGSAQAQMHQQHPVQGSQQMPGQMNHQPPPGSFMQY
Sbjct: 301 QGILQGPPGVPPAQFPGYGSPQFPPGSAQAQMHQQHPVQGSQQMPGQMNHQPPPGSFMQY 360
Query: 361 PGDGGRPVQDAPGQQAMPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQFP 420
PGDGGRPVQDAPGQQAMPF DQQFP
Sbjct: 361 PGDGGRPVQDAPGQQAMPFHGHGGGQHLPPGYGGQPQFQQGPRPPMPPQQFPMYGDQQFP 420
Query: 421 PGTGPQMMMPFAGQGGGQQHPFRPYNSH 448
PGTGPQMMMPFAGQGGGQQHPFRPYNSH
Sbjct: 421 PGTGPQMMMPFAGQGGGQQHPFRPYNSH 448
>Os08g0436000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 461
Score = 314 bits (804), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 152/207 (73%), Positives = 170/207 (82%), Gaps = 5/207 (2%)
Query: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
VFSAFGFV KIATFEKA+G+QALIQ+ D TA AK +LDGR IP YLLPE C LRI
Sbjct: 132 VFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLPEHVPTCHLRI 191
Query: 85 NYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGS-----GPDGKKQEAESNVLLASVEN 139
+SAH LN+KFQSHRSRDYTNPYLPV P+AI+G GPDGK +E ESNVLLAS+EN
Sbjct: 192 TFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQPTLGPDGKIKEPESNVLLASIEN 251
Query: 140 MQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGG 199
MQY VT+DVLH VFSAFG VQKIA+FEKN G QALIQYPDI TA AK+ALEGH IY+GG
Sbjct: 252 MQYAVTVDVLHTVFSAFGTVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEGHCIYDGG 311
Query: 200 YCKLHLTFSRHTDLNVKVNNERGRDYT 226
YCKLHL++SRHTDLNVK ++ER RDYT
Sbjct: 312 YCKLHLSYSRHTDLNVKAHDERSRDYT 338
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 70/107 (65%), Gaps = 7/107 (6%)
Query: 127 EAESNVLLASVENMQ-YVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVA 185
++ NVLL + E +Q ++IDV+H VFSAFGFV KIA FEK +GFQALIQY D TA+
Sbjct: 106 DSSGNVLLVTFEGVQPNDISIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALE 165
Query: 186 AKEALEGHSI------YEGGYCKLHLTFSRHTDLNVKVNNERGRDYT 226
AK +L+G SI C L +TFS H DLN+K + R RDYT
Sbjct: 166 AKNSLDGRSIPRYLLPEHVPTCHLRITFSAHKDLNIKFQSHRSRDYT 212
>Os03g0376900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 464
Score = 303 bits (776), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/206 (73%), Positives = 170/206 (82%), Gaps = 4/206 (1%)
Query: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
VFSAFGFV KIATFEKA+G+QALIQ+ D TAS+A+ ALDGR IP YLLPE C LRI
Sbjct: 136 VFSAFGFVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIPRYLLPEHVTSCCLRI 195
Query: 85 NYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAID----GSGPDGKKQEAESNVLLASVENM 140
++SAH LN+KFQSHRSRDYTNPYLPV SAID G DG+K EAE NVLLAS+ENM
Sbjct: 196 SFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDTLQPAVGADGRKVEAEGNVLLASIENM 255
Query: 141 QYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGGY 200
QY VT+DVLH VFSAFG VQKIAIFEKN G QALIQYPD+ TA AKEALEGH IY+GGY
Sbjct: 256 QYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIYDGGY 315
Query: 201 CKLHLTFSRHTDLNVKVNNERGRDYT 226
CKLHL++SRHTDLNVK ++++ RDYT
Sbjct: 316 CKLHLSYSRHTDLNVKAHSDKSRDYT 341
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 71/107 (66%), Gaps = 7/107 (6%)
Query: 127 EAESNVLLASVENMQYV-VTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVA 185
E NVLL ++E +Q VTIDV+H VFSAFGFV KIA FEK +GFQALIQY D TA A
Sbjct: 110 ETAGNVLLVTIEGVQANDVTIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAATASA 169
Query: 186 AKEALEGHSI------YEGGYCKLHLTFSRHTDLNVKVNNERGRDYT 226
A+EAL+G SI C L ++FS H DLN+K + R RDYT
Sbjct: 170 AREALDGRSIPRYLLPEHVTSCCLRISFSAHKDLNIKFQSHRSRDYT 216
>Os01g0867800 HnRNP-L/PTB/hephaestus splicing factor family protein
Length = 439
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 83/133 (62%), Gaps = 8/133 (6%)
Query: 118 GSGPDGKKQEAESNVLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQY 177
G PD QE + +LL ++ +M Y +TI+VLH+VFS +GFV+KI F+K++GFQ LIQY
Sbjct: 87 GRNPD---QEEPNRILLVTIHHMLYPITIEVLHQVFSPYGFVEKIVTFQKSAGFQTLIQY 143
Query: 178 PDIQTAVAAKEALEGHSIYEGGYCKLHLTFSRHTDLNVKVNNERGRDYTG----GNTAPT 233
Q+A+ A AL G +IY+G C+L + +S ++L V NN+R RD+T
Sbjct: 144 QSRQSAIQAYGALHGRNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRSR 202
Query: 234 SNQPSILGPQPVY 246
S+QPS P ++
Sbjct: 203 SSQPSYNDPSSLF 215
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 98/221 (44%), Gaps = 47/221 (21%)
Query: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
VFS +GFV+KI TF+K++G+Q LIQ+ ++A A AL GR I D C L I
Sbjct: 118 VFSPYGFVEKIVTFQKSAGFQTLIQYQSRQSAIQAYGALHGRNI-------YDGCCQLDI 170
Query: 85 NYSAHTVLNVKFQSHRSRDYTNPYLP---------------------------------- 110
YS + L V + + RSRD+TNP LP
Sbjct: 171 QYSNLSELQVHYNNDRSRDFTNPSLPTEQRSRSSQPSYNDPSSLFGFQQPGDPYAQMSKA 230
Query: 111 -VAPSAIDGSGPDGKKQEAESNVLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNS 169
+ +A G+ P G + LL S N + D L +FS +G + +I I KN
Sbjct: 231 AMIAAAFGGTLPPGVSGINDRCTLLVSNLNTDKIDE-DKLFNLFSMYGNIVRIKIL-KNK 288
Query: 170 GFQALIQYPDIQTAVAAKEALEGHSIYEGGYCKLHLTFSRH 210
ALIQ D A A L+G ++ KL + +S++
Sbjct: 289 PDHALIQMADGLQAELAVLYLKGAMLFGK---KLEVNYSKY 326
>Os05g0437300 HnRNP-L/PTB/hephaestus splicing factor family protein
Length = 444
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 80/113 (70%), Gaps = 3/113 (2%)
Query: 126 QEAESN-VLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAV 184
QE+E N +LL ++ +M Y +T++VLH+VF A+G+V+KI F+K++GFQALIQY +Q A+
Sbjct: 96 QESEPNRILLVTIHHMMYPITVEVLHQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAM 155
Query: 185 AAKEALEGHSIYEGGYCKLHLTFSRHTDLNVKVNNERGRDYTGGNTAPTSNQP 237
A AL G +IY+G C+L + +S ++L V NN+R RD+T + PT +P
Sbjct: 156 DAFGALHGRNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFTNP-SLPTEQRP 206
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 98/221 (44%), Gaps = 47/221 (21%)
Query: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
VF A+G+V+KI TF+K++G+QALIQ+ + A A AL GR I D C L I
Sbjct: 123 VFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHGRNI-------YDGCCQLDI 175
Query: 85 NYSAHTVLNVKFQSHRSRDYTNPYLP---------------------------------- 110
YS + L V + + RSRD+TNP LP
Sbjct: 176 QYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYPDPGGLYAFQQPGASYAQMGRA 235
Query: 111 -VAPSAIDGSGPDGKKQEAESNVLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNS 169
+ +A G+ P G E L+ S N + D L +FS +G + +I I +N
Sbjct: 236 AMITAAFGGTLPPGVTGTNERCTLIVSNLNTDK-INEDKLFNLFSLYGNIVRIKIL-RNK 293
Query: 170 GFQALIQYPDIQTAVAAKEALEGHSIYEGGYCKLHLTFSRH 210
AL++ D A A L+G ++ KL + +S++
Sbjct: 294 PDHALVEMADGFQAELAVHYLKGAVLFAK---KLEVNYSKY 331
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,909,474
Number of extensions: 763895
Number of successful extensions: 3124
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3099
Number of HSP's successfully gapped: 9
Length of query: 448
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 344
Effective length of database: 11,605,545
Effective search space: 3992307480
Effective search space used: 3992307480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)