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Os01g0867800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HnRNP-L/PTB/hephaestus splicing factor family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0135) R2 : 0.634
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.963 (0.0349) R2dC : 0.618 R2C : 0.603
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.155 (0.0285) R2dN8 : 0.0308 R2N8 : 0.0159
σ : 0.255
deviance : 29.76
__
_____
C
peak time of C : 19.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.18 0.231 12.4 0.299 0.915 0.136 -0.598 0.679 0.191 19 0.63 31 -- --
26.42 0.239 12.4 0.341 0.947 0.189 -0.312 -- 0.216 18.9 15.66 137 -- --
24.97 0.233 12.4 0.294 0.907 0.15 -- 0.607 0.189 18.9 0.7703 48 -- --
26.35 0.239 12.4 0.332 0.988 0.244 -- -- 0.219 19.1 27.14 206 -- --
63.37 0.373 12.4 0.303 -- 0.338 -- 0.391 0.171 -- 0.29 40 -- --
27.23 0.245 12.4 0.309 0.966 -- -0.0169 -- 0.19 19.6 -- -- -- --
27.23 0.244 12.4 0.31 0.966 -- -- -- 0.19 19.6 -- -- -- --
64.37 0.375 12.4 0.31 -- 0.34 -- -- 0.173 -- 0.29 40 -- --
28.93 0.25 12.4 -- 0.982 0.201 -- -- 0.174 19.3 35.96 249 -- --
77.31 0.411 12.4 0.296 -- -- -- -- 0.175 -- -- -- -- --
29.76 0.255 12.4 -- 0.963 -- -- -- 0.155 19.6 -- -- -- --
66.11 0.38 12.4 -- -- 0.343 -- -- 0.148 -- 1.07 6 -- --
79.62 0.416 12.4 -- -- -- -- -- 0.142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.68 atmosphere 1010.0 720 < th dose independent rect. 19 2
2 21.97 atmosphere 1010.0 90 < th dose independent rect. 19 12
5 22.25 temperature 15.0 720 > th dose independent rect. 19 2
6 22.28 temperature 15.0 90 > th dose independent rect. 19 12
10 22.56 wind 7.0 270 < th dose independent rect. 14 11
17 22.69 wind 9.0 720 < th dose independent rect. 12 7
18 22.71 wind 9.0 720 < th dose independent rect. 7 18
21 22.76 wind 9.0 720 < th dose independent rect. 21 22
24 22.78 temperature 15.0 720 > th dose independent rect. 7 12
27 22.81 temperature 15.0 720 > th dose independent rect. 16 17
28 22.82 precipitation 0.1 720 < th dose independent sin 21 NA
31 22.82 precipitation 0.1 720 < th dose dependent sin 21 NA
34 22.85 atmosphere 1010.0 720 < th dose independent rect. 15 7
37 22.90 temperature 15.0 720 > th dose independent rect. 10 11
40 22.91 wind 9.0 720 < th dose independent rect. 5 14
53 23.00 temperature 15.0 720 > th dose independent rect. 4 17
54 23.00 temperature 15.0 720 > th dose independent rect. 6 21
58 23.04 temperature 15.0 720 > th dose independent rect. 7 14
66 23.07 wind 9.0 720 < th dose independent rect. 13 15
71 23.09 temperature 15.0 720 > th dose independent rect. 15 7
74 23.10 wind 9.0 720 < th dose independent rect. 7 10
84 23.12 atmosphere 1015.0 720 < th dose independent rect. 19 18
86 23.14 atmosphere 1010.0 720 < th dose independent rect. 11 11
89 23.15 wind 9.0 720 < th dose independent rect. 7 12
90 23.15 wind 9.0 720 < th dose independent rect. 3 16
108 23.18 temperature 15.0 270 > th dose independent rect. 13 15
109 23.19 atmosphere 1010.0 270 < th dose independent sin 13 NA
115 23.21 temperature 15.0 720 > th dose independent rect. 21 7
156 23.30 temperature 15.0 270 > th dose independent sin 8 NA
159 23.30 temperature 15.0 90 > th dose independent sin 17 NA
162 23.31 temperature 15.0 270 > th dose independent sin 19 NA
168 23.31 temperature 15.0 720 > th dose independent rect. 10 16
170 23.31 temperature 10.0 90 > th dose dependent rect. 19 12
176 23.32 precipitation 0.1 720 < th dose independent rect. 8 23
177 23.32 precipitation 0.1 720 < th dose dependent rect. 8 23
188 23.33 temperature 15.0 720 > th dose independent rect. 19 19
208 23.37 atmosphere 1010.0 270 < th dose independent rect. 13 16
228 23.39 temperature 15.0 720 > th dose independent rect. 19 8
231 23.39 radiation 40.0 270 < th dose independent rect. 14 11
234 23.39 temperature 15.0 270 > th dose independent rect. 14 21
238 23.40 precipitation 0.1 270 < th dose independent rect. 1 13
243 23.40 temperature 10.0 720 > th dose dependent rect. 19 2
244 23.40 precipitation 0.1 270 < th dose dependent rect. 1 13
249 23.41 wind 7.0 720 < th dose independent rect. 16 17
260 23.43 temperature 15.0 10 > th dose independent sin 7 NA
295 23.43 temperature 15.0 10 > th dose independent sin 1 NA
312 23.43 temperature 15.0 270 > th dose independent rect. 1 13
323 23.46 wind 7.0 720 < th dose independent rect. 21 7
328 23.46 humidity 50.0 90 > th dose dependent rect. 7 12
330 23.47 temperature 15.0 720 > th dose independent sin 0 NA
332 23.47 precipitation 0.1 720 < th dose independent rect. 1 6
336 23.47 precipitation 0.1 720 < th dose dependent rect. 1 6
344 23.49 radiation 40.0 720 < th dose independent rect. 7 2
350 23.49 atmosphere 995.0 90 > th dose independent rect. 7 12
354 23.50 atmosphere 1015.0 720 < th dose independent rect. 4 17
359 23.50 radiation 1.0 720 < th dose dependent rect. 19 11
368 23.52 precipitation 0.1 270 < th dose independent rect. 14 11
373 23.52 precipitation 0.1 270 < th dose dependent rect. 14 11
386 23.54 atmosphere 1015.0 90 < th dose dependent rect. 19 12
388 23.55 atmosphere 1010.0 720 < th dose independent sin 17 NA
391 23.55 temperature 10.0 270 > th dose independent rect. 14 11
393 23.55 wind 9.0 90 < th dose independent rect. 7 12
397 23.55 temperature 15.0 10 > th dose independent rect. 16 13
398 23.55 atmosphere 995.0 270 > th dose independent rect. 1 13
399 23.55 atmosphere 1015.0 270 < th dose independent rect. 1 13
403 23.56 wind 7.0 720 < th dose independent rect. 7 2
412 23.56 radiation 20.0 10 < th dose dependent sin 14 NA
428 23.58 wind 9.0 720 < th dose independent rect. 7 8
437 23.59 temperature 15.0 720 > th dose independent rect. 17 23
440 23.60 humidity 50.0 720 > th dose independent rect. 17 14
445 23.60 precipitation 0.1 720 < th dose independent rect. 7 18
449 23.60 precipitation 0.1 720 < th dose dependent rect. 7 18
453 23.61 wind 9.0 270 < th dose independent rect. 1 13
461 23.62 humidity 90.0 720 < th dose independent rect. 16 1
471 23.63 wind 9.0 720 < th dose independent rect. 1 6
472 23.63 temperature 10.0 720 > th dose independent rect. 1 6
473 23.63 temperature 30.0 720 < th dose independent rect. 1 6
474 23.63 humidity 50.0 720 > th dose independent rect. 1 6
476 23.63 atmosphere 995.0 720 > th dose independent rect. 1 6
477 23.63 radiation 30.0 720 < th dose independent rect. 1 6
483 23.63 humidity 50.0 90 > th dose independent rect. 7 12
494 23.64 atmosphere 1015.0 720 < th dose independent rect. 1 6
501 23.65 humidity 60.0 720 > th dose independent rect. 19 2
517 23.66 temperature 10.0 720 > th dose independent rect. 7 2
519 23.66 humidity 50.0 720 > th dose independent rect. 7 2
520 23.66 atmosphere 995.0 720 > th dose independent rect. 7 2
521 23.66 atmosphere 1015.0 720 < th dose independent rect. 7 2
525 23.66 precipitation 0.1 90 < th dose independent rect. 19 12
528 23.66 temperature 10.0 720 > th dose independent rect. 9 22
530 23.66 precipitation 0.1 90 < th dose dependent rect. 19 12
532 23.67 temperature 15.0 720 > th dose independent rect. 17 1
546 23.68 temperature 30.0 720 < th dose independent rect. 19 2
548 23.68 atmosphere 995.0 720 > th dose independent rect. 19 2
549 23.68 radiation 1.0 720 < th dose independent rect. 19 2
556 23.68 temperature 10.0 90 > th dose independent rect. 7 12
558 23.68 temperature 15.0 270 > th dose independent rect. 22 12
559 23.68 temperature 30.0 90 < th dose independent rect. 19 12
560 23.68 humidity 50.0 90 > th dose independent rect. 19 12
562 23.68 atmosphere 995.0 90 > th dose independent rect. 19 12
563 23.68 atmosphere 1015.0 90 < th dose independent rect. 7 12
564 23.68 radiation 40.0 90 < th dose independent rect. 19 12
570 23.68 temperature 15.0 10 > th dose independent rect. 15 16
572 23.68 temperature 10.0 720 > th dose independent rect. 21 22
573 23.68 radiation 1.0 720 < th dose dependent rect. 19 2
604 23.69 atmosphere 995.0 720 > th dose independent rect. 19 18
607 23.69 atmosphere 1015.0 720 < th dose dependent rect. 19 2
608 23.70 temperature 30.0 720 < th dose independent rect. 7 2
609 23.70 precipitation 0.1 720 < th dose independent rect. 7 2
630 23.70 precipitation 0.1 720 < th dose dependent rect. 7 2
631 23.71 wind 9.0 720 < th dose independent rect. 19 2
637 23.71 wind 9.0 90 < th dose independent rect. 19 12
638 23.71 humidity 60.0 720 > th dose independent rect. 19 12
654 23.72 humidity 50.0 720 > th dose independent rect. 19 17
656 23.72 wind 9.0 720 < th dose dependent rect. 23 2
678 23.74 temperature 30.0 720 < th dose independent rect. 19 12
680 23.74 atmosphere 995.0 720 > th dose independent rect. 19 12
681 23.74 atmosphere 1015.0 720 < th dose independent rect. 7 12
682 23.74 radiation 30.0 720 < th dose independent rect. 19 12
693 23.75 humidity 60.0 720 > th dose independent rect. 19 10
719 23.77 atmosphere 1015.0 720 < th dose independent rect. 7 10
728 23.77 radiation 30.0 720 < th dose independent rect. 17 14
733 23.77 temperature 15.0 90 > th dose independent rect. 17 18
742 23.78 wind 5.0 720 < th dose independent rect. 23 2
745 23.78 wind 9.0 720 < th dose independent rect. 19 12
755 23.79 temperature 30.0 720 < th dose independent rect. 19 10
757 23.79 atmosphere 995.0 720 > th dose independent rect. 19 10
760 23.79 radiation 20.0 720 < th dose independent rect. 19 10
767 23.79 precipitation 0.1 90 < th dose independent rect. 7 12
770 23.79 atmosphere 1015.0 720 < th dose independent rect. 5 14
777 23.79 humidity 50.0 270 > th dose dependent rect. 6 10
778 23.79 radiation 20.0 720 < th dose dependent rect. 19 10
781 23.79 atmosphere 995.0 90 > th dose dependent rect. 7 12
782 23.79 radiation 40.0 90 < th dose dependent rect. 19 12
783 23.79 precipitation 0.1 90 < th dose dependent rect. 7 12
784 23.80 wind 1.0 720 > th dose independent rect. 19 2
804 23.81 precipitation 0.1 720 < th dose independent rect. 21 6
807 23.81 radiation 1.0 720 < th dose independent rect. 19 10
820 23.81 precipitation 0.1 720 < th dose dependent rect. 21 6
823 23.82 radiation 40.0 270 < th dose independent rect. 6 11
847 23.84 wind 7.0 90 < th dose independent rect. 17 11
849 23.84 precipitation 0.1 720 < th dose independent rect. 7 12
854 23.84 radiation 40.0 720 < th dose independent rect. 15 16
861 23.84 wind 9.0 720 < th dose dependent rect. 7 2
863 23.84 precipitation 0.1 720 < th dose dependent rect. 7 12
874 23.85 wind 1.0 90 > th dose independent rect. 7 12
883 23.86 radiation 40.0 270 < th dose independent rect. 5 8
898 23.87 radiation 10.0 30 < th dose independent sin 14 NA
902 23.87 precipitation 0.1 720 < th dose independent rect. 13 6
913 23.87 wind 9.0 720 < th dose dependent rect. 22 4
914 23.87 precipitation 0.1 720 < th dose dependent rect. 13 6
918 23.88 wind 9.0 720 < th dose independent sin 15 NA
926 23.88 wind 9.0 720 < th dose independent rect. 19 10
936 23.88 radiation 20.0 90 < th dose dependent rect. 7 21
940 23.89 precipitation 0.1 720 < th dose independent rect. 19 2
959 23.89 precipitation 0.1 720 < th dose dependent rect. 19 2
984 23.91 wind 1.0 720 > th dose independent rect. 9 7
986 23.91 temperature 30.0 720 < th dose independent rect. 21 7
987 23.91 humidity 50.0 720 > th dose independent rect. 21 7
990 23.91 atmosphere 995.0 720 > th dose independent rect. 21 7
991 23.91 radiation 1.0 720 < th dose independent rect. 21 7
997 23.91 precipitation 0.1 720 < th dose independent rect. 4 9