BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0619000 Os01g0619000|AK068707
(448 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53180.1 | chr5:21568393-21571537 REVERSE LENGTH=430 321 4e-88
AT3G01150.1 | chr3:51732-54344 FORWARD LENGTH=400 303 2e-82
AT1G43190.1 | chr1:16275432-16278185 REVERSE LENGTH=433 106 3e-23
>AT5G53180.1 | chr5:21568393-21571537 REVERSE LENGTH=430
Length = 429
Score = 321 bits (823), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 153/207 (73%), Positives = 173/207 (83%), Gaps = 5/207 (2%)
Query: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
VFSAFGFV KI TFEK +GYQAL+QF D ETA++AK ALDGR IP YLL E C+L+I
Sbjct: 133 VFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKI 192
Query: 85 NYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGSG-----PDGKKQEAESNVLLASVEN 139
YSAHT L VKFQSHRSRDYTNPYLPVAPSAID +G DGKK E ESNVLLAS+EN
Sbjct: 193 TYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIEN 252
Query: 140 MQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGG 199
MQY VT+DVLH VF+AFG VQKIA+F+KN G QALIQY D+QTAV AKEALEGH IY+GG
Sbjct: 253 MQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGG 312
Query: 200 YCKLHLTFSRHTDLNVKVNNERGRDYT 226
+CKLH+T+SRHTDL++KVNN+R RDYT
Sbjct: 313 FCKLHITYSRHTDLSIKVNNDRSRDYT 339
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 70/104 (67%), Gaps = 7/104 (6%)
Query: 131 NVLLASVE-NMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEA 189
NVLL ++E + +V+IDVLH VFSAFGFV KI FEK +G+QAL+Q+ D +TA AAK A
Sbjct: 111 NVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLA 170
Query: 190 LEGHSI------YEGGYCKLHLTFSRHTDLNVKVNNERGRDYTG 227
L+G SI G C L +T+S HTDL VK + R RDYT
Sbjct: 171 LDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTN 214
>AT3G01150.1 | chr3:51732-54344 FORWARD LENGTH=400
Length = 399
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/207 (70%), Positives = 169/207 (81%), Gaps = 5/207 (2%)
Query: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
VFSAFGFV KIATFEKA+G+QAL+QF D ETAS+A++ALDGR IP YLL C+LR+
Sbjct: 132 VFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRM 191
Query: 85 NYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGS-----GPDGKKQEAESNVLLASVEN 139
+YSAHT LN+KFQSHRSRDYTNPYLPV +A+DGS G DGKK E++SNVLL +EN
Sbjct: 192 SYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLGLIEN 251
Query: 140 MQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGG 199
MQY VT+DVLH VFSA+G VQKIAIFEKN QALIQY DI TA AKEALEGH IY+GG
Sbjct: 252 MQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGG 311
Query: 200 YCKLHLTFSRHTDLNVKVNNERGRDYT 226
YCKL L++SRHTDLNVK +++ RDYT
Sbjct: 312 YCKLRLSYSRHTDLNVKAFSDKSRDYT 338
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 73/103 (70%), Gaps = 7/103 (6%)
Query: 131 NVLLASVENMQ-YVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEA 189
NVLL + E ++ + V+IDV+H VFSAFGFV KIA FEK +GFQAL+Q+ D++TA AA+ A
Sbjct: 110 NVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSA 169
Query: 190 LEGHSI------YEGGYCKLHLTFSRHTDLNVKVNNERGRDYT 226
L+G SI G C L +++S HTDLN+K + R RDYT
Sbjct: 170 LDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYT 212
>AT1G43190.1 | chr1:16275432-16278185 REVERSE LENGTH=433
Length = 432
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 108/205 (52%), Gaps = 33/205 (16%)
Query: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
+F FG + K+ + QAL+Q D +A SA +V T+R
Sbjct: 25 LFQPFGVITKLVMLRAKN--QALLQMQDVSSAVSALQFFT------------NVQPTIR- 69
Query: 85 NYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGSGPDGKKQEAESNVLLASVENMQYVV 144
V V+F SH+ L I G +++ + +LL ++ +M Y +
Sbjct: 70 ---GRNVY-VQFSSHQE-------LTTIEQNIHG------REDEPNRILLVTIHHMLYPI 112
Query: 145 TIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGGYCKLH 204
T+DVLH+VFS +GFV+K+ F+K++GFQALIQY Q A +A+ AL+G +IY+G C+L
Sbjct: 113 TVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGC-CQLD 171
Query: 205 LTFSRHTDLNVKVNNERGRDYTGGN 229
+ FS +L V NN+R RDYT N
Sbjct: 172 IQFSNLEELQVNYNNDRSRDYTNPN 196
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 98/212 (46%), Gaps = 38/212 (17%)
Query: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
VFS +GFV+K+ TF+K++G+QALIQ+ + A+SA+ AL GR I D C L I
Sbjct: 120 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNI-------YDGCCQLDI 172
Query: 85 NYSAHTVLNVKFQSHRSRDYTNPYLP--------------------------VAPSAIDG 118
+S L V + + RSRDYTNP LP +A G
Sbjct: 173 QFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGG 232
Query: 119 SGPDGKKQEAESNVLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYP 178
P G + +L S N + D L +FS +G + +I + +N AL+Q
Sbjct: 233 GLPPGITGTNDRCTVLVSNLNADSIDE-DKLFNLFSLYGNIVRIKLL-RNKPDHALVQMG 290
Query: 179 DIQTAVAAKEALEGHSIYEGGYCKLHLTFSRH 210
D A A L+G ++ +L + FS+H
Sbjct: 291 DGFQAELAVHFLKGAMLFGK---RLEVNFSKH 319
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,784,970
Number of extensions: 420100
Number of successful extensions: 1618
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1618
Number of HSP's successfully gapped: 6
Length of query: 448
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 346
Effective length of database: 8,310,137
Effective search space: 2875307402
Effective search space used: 2875307402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)