BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0370600 Os03g0370600|Os03g0370600
         (64 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0370600  Similar to Hydrophobic protein LTI6A (Low temp...   129   4e-31
Os07g0635900  Hydrophobic protein LTI6A (Low temperature-ind...    90   4e-19
Os05g0138300  Hydrophobic protein LTI6B (Low temperature-ind...    78   2e-15
Os09g0558100  Similar to Low-temperature induced protein lt1...    73   4e-14
Os03g0286900  Similar to Low-temperature induced protein lt1...    69   9e-13

>Os03g0370600 Similar to Hydrophobic protein LTI6A (Low temperature-induced
          protein 6A)
          Length = 64

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MADRPPAMADRTATFVDLVIAIILPPLGVFLKVGCEIEFWICLLLTFLGYFPGIIYAVWV 60
          MADRPPAMADRTATFVDLVIAIILPPLGVFLKVGCEIEFWICLLLTFLGYFPGIIYAVWV
Sbjct: 1  MADRPPAMADRTATFVDLVIAIILPPLGVFLKVGCEIEFWICLLLTFLGYFPGIIYAVWV 60

Query: 61 IVNH 64
          IVNH
Sbjct: 61 IVNH 64



>Os07g0635900 Hydrophobic protein LTI6A (Low temperature-induced protein 6A)
          Length = 56

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 47/56 (83%)

Query: 8  MADRTATFVDLVIAIILPPLGVFLKVGCEIEFWICLLLTFLGYFPGIIYAVWVIVN 63
          MAD TAT +D+++AIILPPLGVF K GC IEFWICLLLTF GY PGIIYAVWVI  
Sbjct: 1  MADSTATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56



>Os05g0138300 Hydrophobic protein LTI6B (Low temperature-induced protein 6B)
          Length = 55

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 43/52 (82%)

Query: 12 TATFVDLVIAIILPPLGVFLKVGCEIEFWICLLLTFLGYFPGIIYAVWVIVN 63
          TA  +D++IAIILPPLGVFLK GC  EFWICLLLTFLGY PGIIYA++ I  
Sbjct: 4  TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55



>Os09g0558100 Similar to Low-temperature induced protein lt101.2
          Length = 72

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 46/55 (83%), Gaps = 1/55 (1%)

Query: 9  ADRTATFVDLVIAIILPPLGVFLKVGC-EIEFWICLLLTFLGYFPGIIYAVWVIV 62
          + R  TF+++++AIILPPLGVFL+ GC  +EF ICLLLT LGY PGIIYAV+V+V
Sbjct: 3  SGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLV 57



>Os03g0286900 Similar to Low-temperature induced protein lt101.2
          Length = 54

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 44/51 (86%)

Query: 12 TATFVDLVIAIILPPLGVFLKVGCEIEFWICLLLTFLGYFPGIIYAVWVIV 62
          +ATF+++++AI LPP+GVFL+ G  IEFWI LLLT LGY PGIIYAV+V+V
Sbjct: 3  SATFLEVLLAIFLPPVGVFLRYGLGIEFWIDLLLTILGYIPGIIYAVYVLV 53



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.335    0.152    0.517 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,348,084
Number of extensions: 66886
Number of successful extensions: 177
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 7
Length of query: 64
Length of database: 17,035,801
Length adjustment: 36
Effective length of query: 28
Effective length of database: 15,156,097
Effective search space: 424370716
Effective search space used: 424370716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 149 (62.0 bits)