Os05g0138300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hydrophobic protein LTI6B (Low temperature-induced protein 6B).
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Os05g0138300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hydrophobic protein LTI6B (Low temperature-induced protein 6B).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.08 | 0.393 | 11.1 | -1.03 | 0.783 | -0.568 | -0.116 | -3.49 | 0.0364 | 20.8 | -18.64 | 11252 | -- | -- |
| 81.71 | 0.421 | 10.9 | -0.37 | 0.782 | -0.134 | -0.0968 | -- | 0.21 | 20.7 | -16.48 | 7602 | -- | -- |
| 69.75 | 0.389 | 11.1 | -0.829 | 0.787 | -0.743 | -- | -3.36 | 0.113 | 20.8 | -34.37 | 16876 | -- | -- |
| 80.52 | 0.418 | 10.9 | -0.123 | 0.786 | -0.334 | -- | -- | 0.316 | 20.7 | -60.83 | 31159 | -- | -- |
| 104.62 | 0.476 | 11.1 | -0.815 | -- | -0.728 | -- | -3.34 | 0.0957 | -- | 2.571 | 17319 | -- | -- |
| 82.01 | 0.425 | 11 | -0.439 | 0.78 | -- | -0.101 | -- | 0.174 | 20.7 | -- | -- | -- | -- |
| 82.04 | 0.424 | 11 | -0.435 | 0.781 | -- | -- | -- | 0.174 | 20.7 | -- | -- | -- | -- |
| 115.28 | 0.5 | 10.9 | -0.222 | -- | -0.282 | -- | -- | 0.281 | -- | 2.078 | 17377 | -- | -- |
| 80.67 | 0.418 | 10.9 | -- | 0.787 | -0.417 | -- | -- | 0.353 | 20.7 | -140 | 31198 | -- | -- |
| 116.49 | 0.504 | 10.9 | -0.437 | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
| 87.03 | 0.436 | 10.9 | -- | 0.782 | -- | -- | -- | 0.222 | 20.6 | -- | -- | -- | -- |
| 112.6 | 0.494 | 10.9 | -- | -- | -0.432 | -- | -- | 0.349 | -- | 23.8 | 18811 | -- | -- |
| 121.53 | 0.515 | 10.9 | -- | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.62 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 17 |
| 4 | 66.97 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 11 |
| 21 | 67.84 | temperature | 20 | 90 | > th | dose independent | sin | 9 | NA |
| 44 | 68.62 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 46 | 68.65 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 64 | 68.99 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 71 | 69.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 73 | 69.18 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 2 |
| 74 | 69.18 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 5 |
| 76 | 69.21 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 80 | 69.28 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 23 |
| 92 | 69.44 | temperature | 30 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 95 | 69.45 | temperature | 10 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 96 | 69.46 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 97 | 69.46 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 2 |
| 99 | 69.47 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 100 | 69.48 | temperature | 10 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 106 | 69.50 | temperature | 30 | 14400 | < th | dose dependent | rect. | 5 | 6 |
| 129 | 69.59 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 137 | 69.62 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 193 | 69.77 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 212 | 69.80 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 21 |
| 216 | 69.81 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 228 | 69.82 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 237 | 69.83 | humidity | 80 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 241 | 69.84 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 258 | 69.86 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 266 | 69.87 | temperature | 30 | 14400 | < th | dose dependent | sin | 4 | NA |
| 302 | 69.91 | temperature | 10 | 14400 | > th | dose dependent | sin | 5 | NA |
| 376 | 69.97 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 386 | 69.98 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 424 | 70.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 457 | 70.03 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 458 | 70.03 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 10 |
| 480 | 70.04 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 555 | 70.09 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 23 |
| 772 | 70.18 | temperature | 30 | 14400 | < th | dose dependent | no | NA | NA |
| 798 | 70.18 | temperature | 30 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 841 | 70.20 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 858 | 70.20 | temperature | 10 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 865 | 70.21 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 889 | 70.21 | temperature | 10 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 919 | 70.23 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 995 | 70.26 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 12 |