Os09g0558100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Low-temperature induced protein lt101.2.
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Os09g0558100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Low-temperature induced protein lt101.2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.95 | 0.182 | 13.4 | -0.651 | 0.243 | 0.197 | -0.281 | 2.23 | -0.0688 | 11.8 | 0.3234 | 4177 | -- | -- |
| 17.39 | 0.196 | 13.3 | -0.289 | 0.0247 | -0.258 | 0.19 | -- | 0.0156 | 7.04 | 20 | 12729 | -- | -- |
| 15.17 | 0.181 | 13.4 | -0.658 | 0.251 | 0.197 | -- | 2.07 | -0.0683 | 11.6 | 0.2597 | 4232 | -- | -- |
| 17.01 | 0.193 | 13.3 | -0.273 | 0.0384 | -0.283 | -- | -- | 0.0111 | 0.262 | 10 | 12780 | -- | -- |
| 17.94 | 0.198 | 13.3 | -0.297 | -- | -0.222 | -- | 0.0222 | 0.00735 | -- | 0.2597 | 4232 | -- | -- |
| 18.3 | 0.201 | 13.3 | -0.282 | 0.281 | -- | 0.072 | -- | 0.0153 | 11.6 | -- | -- | -- | -- |
| 18.32 | 0.2 | 13.3 | -0.279 | 0.281 | -- | -- | -- | 0.0156 | 11.7 | -- | -- | -- | -- |
| 17.03 | 0.193 | 13.3 | -0.274 | -- | -0.255 | -- | -- | 0.0118 | -- | 10 | 12780 | -- | -- |
| 18.98 | 0.204 | 13.3 | -- | 0.0438 | -0.291 | -- | -- | 0.0415 | 23.8 | 10 | 12780 | -- | -- |
| 23.29 | 0.225 | 13.3 | -0.287 | -- | -- | -- | -- | 0.0123 | -- | -- | -- | -- | -- |
| 20.37 | 0.211 | 13.3 | -- | 0.284 | -- | -- | -- | 0.0467 | 11.7 | -- | -- | -- | -- |
| 19 | 0.204 | 13.3 | -- | -- | -0.259 | -- | -- | 0.0421 | -- | 10 | 12780 | -- | -- |
| 25.46 | 0.235 | 13.3 | -- | -- | -- | -- | -- | 0.0441 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.30 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 2 | 14.44 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 14 |
| 3 | 14.51 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 22 |
| 14 | 14.95 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 17 | 15.02 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 24 | 15.12 | humidity | 80.0 | 270 | < th | dose independent | rect. | 19 | 20 |
| 25 | 15.15 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 16 | 18 |
| 28 | 15.17 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 30 | 15.19 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 31 | 15.19 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 32 | 15.19 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 15 | 16 |
| 49 | 15.25 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 65 | 15.29 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 75 | 15.31 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 77 | 15.31 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 16 | 18 |
| 78 | 15.31 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 18 |
| 79 | 15.31 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 88 | 15.31 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 8 | 23 |
| 89 | 15.32 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 100 | 15.34 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 105 | 15.34 | radiation | 1.0 | 4320 | < th | dose dependent | no | NA | NA |
| 106 | 15.34 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 108 | 15.34 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 15 |
| 117 | 15.34 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 24 | 19 |
| 195 | 15.38 | radiation | 1.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 222 | 15.39 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 224 | 15.40 | radiation | 1.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 227 | 15.40 | temperature | 15.0 | 10 | > th | dose independent | rect. | 12 | 14 |
| 228 | 15.40 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 238 | 15.40 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 240 | 15.41 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 253 | 15.42 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 254 | 15.42 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 3 |
| 275 | 15.43 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 6 |
| 474 | 15.50 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 2 | NA |
| 475 | 15.50 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 13 |
| 491 | 15.51 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 6 |
| 504 | 15.52 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 540 | 15.53 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 541 | 15.53 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 553 | 15.53 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 5 | 14 |
| 570 | 15.53 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 585 | 15.54 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 14 |
| 592 | 15.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 20 |
| 596 | 15.54 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 23 |
| 599 | 15.54 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 610 | 15.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 614 | 15.55 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 623 | 15.55 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 625 | 15.56 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 647 | 15.57 | radiation | 1.0 | 4320 | > th | dose independent | no | NA | NA |
| 648 | 15.57 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 650 | 15.57 | humidity | 80.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 651 | 15.57 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 10 |
| 667 | 15.57 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 3 | 19 |
| 701 | 15.57 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 728 | 15.58 | radiation | 1.0 | 4320 | < th | dose independent | no | NA | NA |
| 729 | 15.58 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 784 | 15.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 785 | 15.58 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 13 | 7 |
| 786 | 15.58 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 8 | 11 |
| 788 | 15.58 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 8 | 14 |
| 799 | 15.59 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 814 | 15.59 | radiation | 1.0 | 30 | < th | dose dependent | sin | 23 | NA |
| 815 | 15.59 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 839 | 15.60 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 845 | 15.60 | temperature | 15.0 | 10 | > th | dose independent | rect. | 21 | 19 |
| 884 | 15.61 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 11 | 9 |
| 896 | 15.61 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 945 | 15.63 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 946 | 15.63 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 962 | 15.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 8 |