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Os07g0635900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hydrophobic protein LTI6A (Low temperature-induced protein 6A).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0336) R2 : 0.445
β1 : -1.77 (0.123) R2dD : 0.263 R2D : 0.182
β2 : 0.97 (0.0798) R2dC : 0.18 R2C : 0.15
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.507 (0.0717) R2dN8 : 0.0814 R2N8 : 0.0104
σ : 0.632
deviance : 181.96
__
_____
C
peak time of C : 0.685
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.58 0.599 10.7 -1.77 0.159 1.01 0.926 -0.751 -0.499 6 27.23 8 -- --
163.22 0.595 10.7 -1.77 0.146 1.05 1.26 -- -0.499 8.14 25.83 7 -- --
164.29 0.597 10.7 -1.77 0.187 0.925 -- -0.785 -0.498 4.36 24.7 7 -- --
167.3 0.602 10.7 -1.74 0.21 0.887 -- -- -0.501 3.46 26.25 7 -- --
165.93 0.6 10.7 -1.76 -- 0.984 -- -0.794 -0.498 -- 24.67 7 -- --
180.76 0.63 10.7 -1.79 0.968 -- -0.536 -- -0.509 0.586 -- -- -- --
181.96 0.632 10.7 -1.77 0.97 -- -- -- -0.507 0.685 -- -- -- --
168.95 0.605 10.7 -1.73 -- 0.992 -- -- -0.497 -- 26.21 7 -- --
246.94 0.732 10.7 -- 0.16 0.926 -- -- -0.316 2.85 27.82 6 -- --
240.92 0.725 10.7 -1.74 -- -- -- -- -0.489 -- -- -- -- --
265 0.761 10.7 -- 0.943 -- -- -- -0.309 0.596 -- -- -- --
247.78 0.733 10.7 -- -- 1.01 -- -- -0.305 -- 27.04 6 -- --
320.8 0.836 10.7 -- -- -- -- -- -0.296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.59 temperature 10.0 270 > th dose dependent rect. 4 10
5 154.22 atmosphere 995.0 270 > th dose dependent rect. 15 2
6 154.35 atmosphere 1000.0 270 > th dose independent rect. 15 2
7 154.49 atmosphere 995.0 90 > th dose dependent rect. 15 4
9 154.82 humidity 90.0 270 < th dose independent rect. 15 2
10 154.87 temperature 15.0 270 > th dose dependent rect. 7 7
11 154.90 radiation 20.0 10 < th dose dependent rect. 8 12
12 155.09 humidity 90.0 270 < th dose independent rect. 14 5
13 155.10 atmosphere 1000.0 90 > th dose independent rect. 3 16
16 155.13 temperature 20.0 90 > th dose dependent rect. 9 7
17 155.21 atmosphere 1000.0 90 > th dose independent rect. 15 4
23 155.48 temperature 20.0 90 > th dose independent rect. 16 3
28 155.57 radiation 30.0 10 < th dose dependent rect. 12 8
29 155.60 temperature 20.0 10 > th dose dependent rect. 10 6
36 155.78 radiation 20.0 10 < th dose independent rect. 12 8
43 155.91 wind 9.0 270 < th dose independent rect. 17 22
45 155.93 wind 3.0 270 > th dose independent rect. 15 2
48 156.00 radiation 40.0 90 < th dose dependent rect. 15 4
54 156.07 humidity 50.0 270 > th dose independent rect. 17 22
55 156.07 temperature 20.0 30 > th dose dependent rect. 7 9
63 156.22 wind 1.0 270 > th dose dependent rect. 15 2
65 156.24 wind 3.0 90 > th dose independent rect. 15 4
67 156.36 radiation 30.0 90 < th dose independent rect. 15 4
70 156.39 radiation 40.0 270 < th dose independent rect. 15 2
71 156.40 precipitation 0.1 270 < th dose independent rect. 15 2
72 156.40 precipitation 0.1 270 < th dose dependent rect. 15 2
77 156.49 temperature 10.0 10 > th dose dependent rect. 20 20
78 156.52 temperature 10.0 90 > th dose dependent rect. 19 21
81 156.55 temperature 20.0 10 > th dose independent rect. 16 4
82 156.55 temperature 25.0 90 > th dose dependent rect. 19 21
86 156.57 radiation 10.0 10 < th dose independent rect. 9 11
88 156.58 temperature 10.0 270 > th dose independent rect. 15 2
90 156.58 atmosphere 1010.0 270 < th dose independent rect. 15 2
92 156.58 temperature 10.0 270 > th dose independent rect. 17 22
93 156.58 temperature 10.0 10 > th dose dependent rect. 16 4
96 156.60 radiation 40.0 90 < th dose dependent rect. 13 6
97 156.61 temperature 20.0 270 > th dose dependent rect. 9 4
100 156.66 atmosphere 995.0 10 > th dose dependent rect. 16 4
101 156.67 temperature 10.0 270 > th dose dependent rect. 14 5
103 156.68 temperature 10.0 90 > th dose dependent rect. 16 3
106 156.73 precipitation 0.1 270 < th dose independent rect. 14 5
107 156.73 humidity 50.0 270 > th dose independent rect. 19 19
108 156.73 precipitation 0.1 270 < th dose dependent rect. 14 5
114 156.85 wind 9.0 270 < th dose independent rect. 19 19
134 157.04 atmosphere 1000.0 10 > th dose independent rect. 16 4
147 157.18 wind 9.0 90 < th dose independent rect. 19 21
149 157.19 temperature 10.0 270 > th dose independent rect. 14 5
151 157.19 atmosphere 1010.0 270 < th dose independent rect. 14 5
153 157.19 temperature 10.0 270 > th dose independent rect. 19 19
154 157.19 atmosphere 995.0 270 > th dose independent rect. 19 19
156 157.25 humidity 50.0 90 > th dose independent rect. 19 21
163 157.33 radiation 40.0 270 < th dose independent rect. 23 11
169 157.36 atmosphere 1000.0 10 > th dose independent rect. 3 17
173 157.41 wind 1.0 270 > th dose dependent rect. 14 5
184 157.48 atmosphere 995.0 90 > th dose dependent rect. 2 17
185 157.49 temperature 25.0 270 > th dose dependent rect. 19 18
199 157.56 temperature 10.0 90 > th dose independent rect. 19 21
208 157.66 radiation 40.0 90 < th dose independent rect. 2 17
214 157.70 wind 9.0 270 < th dose independent rect. 15 2
215 157.70 radiation 20.0 10 < th dose independent rect. 16 4
216 157.72 wind 3.0 10 > th dose independent rect. 16 4
218 157.75 wind 9.0 10 < th dose independent rect. 20 20
225 157.79 precipitation 0.1 10 < th dose independent rect. 16 4
226 157.79 precipitation 0.1 10 < th dose dependent rect. 16 4
245 157.90 temperature 10.0 10 > th dose independent rect. 16 4
248 157.90 atmosphere 1010.0 10 < th dose independent rect. 16 4
250 157.90 radiation 40.0 10 < th dose independent rect. 16 4
251 157.90 temperature 10.0 10 > th dose independent rect. 20 20
258 157.92 atmosphere 995.0 270 > th dose independent rect. 17 22
259 157.92 radiation 40.0 10 < th dose dependent rect. 16 18
272 158.00 wind 9.0 270 < th dose independent rect. 14 5
280 158.05 precipitation 0.1 270 < th dose independent rect. 19 19
281 158.05 precipitation 0.1 270 < th dose dependent rect. 19 19
337 158.27 precipitation 0.1 90 < th dose independent rect. 19 21
339 158.27 precipitation 0.1 90 < th dose dependent rect. 19 21
396 158.51 radiation 20.0 10 < th dose independent rect. 3 17
400 158.53 radiation 1.0 270 > th dose independent rect. 15 2
405 158.54 humidity 50.0 10 > th dose independent rect. 20 20
435 158.65 radiation 20.0 10 < th dose dependent sin 20 NA
438 158.68 precipitation 0.1 10 < th dose independent rect. 20 20
440 158.68 precipitation 0.1 10 < th dose dependent rect. 20 20
447 158.71 temperature 10.0 270 > th dose dependent rect. 19 19
448 158.72 wind 9.0 10 < th dose independent rect. 16 4
453 158.74 atmosphere 995.0 10 > th dose independent rect. 20 20
468 158.82 wind 9.0 270 < th dose independent rect. 9 14
477 158.87 precipitation 0.1 270 < th dose independent rect. 17 22
478 158.87 precipitation 0.1 270 < th dose dependent rect. 17 22
495 158.96 temperature 30.0 270 < th dose independent rect. 24 10
506 159.04 radiation 40.0 270 < th dose independent rect. 24 18
516 159.08 temperature 25.0 270 > th dose dependent rect. 1 12
517 159.08 radiation 40.0 90 < th dose dependent rect. 2 17
545 159.18 wind 1.0 270 > th dose independent rect. 14 17
571 159.31 radiation 40.0 270 < th dose dependent rect. 24 10
577 159.34 humidity 50.0 10 > th dose independent rect. 16 4
581 159.35 radiation 40.0 270 < th dose independent rect. 22 21
591 159.38 wind 1.0 10 > th dose dependent rect. 16 4
610 159.44 atmosphere 1015.0 270 < th dose independent rect. 23 10
620 159.51 precipitation 0.1 270 < th dose independent rect. 23 10
623 159.51 precipitation 0.1 270 < th dose dependent rect. 23 10
625 159.52 radiation 20.0 10 < th dose independent sin 19 NA
626 159.52 atmosphere 1005.0 10 > th dose independent rect. 1 9
638 159.57 radiation 30.0 10 < th dose dependent rect. 3 17
642 159.61 radiation 30.0 90 < th dose independent rect. 16 18
652 159.65 atmosphere 1005.0 270 > th dose independent rect. 24 8
675 159.72 wind 1.0 270 > th dose independent rect. 24 9
682 159.74 radiation 1.0 270 > th dose independent rect. 15 14
702 159.82 wind 7.0 270 < th dose independent rect. 23 10
723 159.88 atmosphere 995.0 270 > th dose dependent rect. 24 9
738 159.99 temperature 10.0 270 > th dose independent rect. 23 10
739 159.99 humidity 50.0 270 > th dose independent rect. 23 10
740 159.99 atmosphere 995.0 270 > th dose independent rect. 23 10
741 159.99 temperature 10.0 270 > th dose independent rect. 9 14
750 160.03 radiation 1.0 90 > th dose independent rect. 9 7
756 160.06 radiation 20.0 10 < th dose independent rect. 16 18
758 160.07 atmosphere 1015.0 270 < th dose independent rect. 14 17
764 160.10 radiation 30.0 10 < th dose dependent rect. 14 20
769 160.11 precipitation 0.1 270 < th dose independent rect. 14 17
772 160.11 precipitation 0.1 270 < th dose dependent rect. 14 17
817 160.29 radiation 40.0 10 < th dose dependent rect. 12 22
840 160.34 temperature 30.0 90 < th dose independent rect. 2 17
853 160.36 humidity 90.0 90 < th dose dependent rect. 16 3
900 160.47 wind 7.0 270 < th dose independent rect. 7 7
918 160.53 wind 9.0 90 < th dose independent rect. 9 7
935 160.58 wind 1.0 90 > th dose independent rect. 9 7
940 160.59 atmosphere 1015.0 90 < th dose independent rect. 16 17
962 160.65 precipitation 0.1 90 < th dose independent rect. 16 17
964 160.65 precipitation 0.1 90 < th dose dependent rect. 16 17
985 160.70 humidity 50.0 270 > th dose independent rect. 7 7