BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0635900 Os07g0635900|AK121089
         (56 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05890.1  | chr3:1758179-1758452 REVERSE LENGTH=55              65   8e-12
AT3G05880.1  | chr3:1756195-1756494 REVERSE LENGTH=55              64   1e-11
AT2G38905.1  | chr2:16244218-16244472 REVERSE LENGTH=55            58   9e-10
AT1G57550.1  | chr1:21312541-21312809 REVERSE LENGTH=53            55   7e-09
AT2G24040.1  | chr2:10224028-10224531 FORWARD LENGTH=76            46   4e-06
AT4G30660.1  | chr4:14955470-14955944 FORWARD LENGTH=75            45   9e-06

>AT3G05890.1 | chr3:1758179-1758452 REVERSE LENGTH=55
          Length = 54

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 37/53 (69%)

Query: 4  STATCXXXXXXXXXXXXGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56
          STAT             GVF KFGC +EFWICL+LT FGYLPGI+YA+++ITK
Sbjct: 2  STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54



>AT3G05880.1 | chr3:1756195-1756494 REVERSE LENGTH=55
          Length = 54

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 37/53 (69%)

Query: 4  STATCXXXXXXXXXXXXGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56
          STAT             GVF +FGCG+EFWICL+LT  GY+PGIIYA++V+TK
Sbjct: 2  STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54



>AT2G38905.1 | chr2:16244218-16244472 REVERSE LENGTH=55
          Length = 54

 Score = 58.2 bits (139), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 31/35 (88%)

Query: 21 GVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVIT 55
          GVF ++GCG+EFWICLLLT  GY+PGIIYA++V+ 
Sbjct: 19 GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53



>AT1G57550.1 | chr1:21312541-21312809 REVERSE LENGTH=53
          Length = 52

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 32/36 (88%)

Query: 21 GVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56
          GVF ++G G+EFW+CLLLT F ++PG+IYA++V+TK
Sbjct: 17 GVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52



>AT2G24040.1 | chr2:10224028-10224531 FORWARD LENGTH=76
          Length = 75

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 1  MADSTATCXXXXXXXXXXXXGVFFKFGC-GIEFWICLLLTFFGYLPGIIYAVWVI 54
          MA S   C            GV  + GC  +EF+ICL+LT  GYLPGIIYA++ I
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55



>AT4G30660.1 | chr4:14955470-14955944 FORWARD LENGTH=75
          Length = 74

 Score = 44.7 bits (104), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)

Query: 21 GVFFKFGC-GIEFWICLLLTFFGYLPGIIYAVWVIT 55
          GV F+ GC  +EF ICL+LT  GY+PGIIYA++VI 
Sbjct: 21 GVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIV 56



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.338    0.152    0.563 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 990,488
Number of extensions: 23092
Number of successful extensions: 83
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 8
Length of query: 56
Length of database: 11,106,569
Length adjustment: 29
Effective length of query: 27
Effective length of database: 10,311,505
Effective search space: 278410635
Effective search space used: 278410635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 104 (44.7 bits)