BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0635900 Os07g0635900|AK121089
         (56 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0635900  Hydrophobic protein LTI6A (Low temperature-ind...    87   4e-18
Os03g0370600  Similar to Hydrophobic protein LTI6A (Low temp...    69   6e-13
Os05g0138300  Hydrophobic protein LTI6B (Low temperature-ind...    66   5e-12

>Os07g0635900 Hydrophobic protein LTI6A (Low temperature-induced protein 6A)
          Length = 56

 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 44/56 (78%)

Query: 1  MADSTATCXXXXXXXXXXXXGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56
          MADSTATC            GVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK
Sbjct: 1  MADSTATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56



>Os03g0370600 Similar to Hydrophobic protein LTI6A (Low temperature-induced
          protein 6A)
          Length = 64

 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 35/56 (62%)

Query: 1  MADSTATCXXXXXXXXXXXXGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56
          MAD TAT             GVF K GC IEFWICLLLTF GY PGIIYAVWVI  
Sbjct: 8  MADRTATFVDLVIAIILPPLGVFLKVGCEIEFWICLLLTFLGYFPGIIYAVWVIVN 63



>Os05g0138300 Hydrophobic protein LTI6B (Low temperature-induced protein 6B)
          Length = 55

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 35/53 (66%)

Query: 4  STATCXXXXXXXXXXXXGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56
           TA C            GVF KFGCG EFWICLLLTF GY+PGIIYA++ ITK
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.338    0.152    0.563 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,473,468
Number of extensions: 31285
Number of successful extensions: 85
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 3
Length of query: 56
Length of database: 17,035,801
Length adjustment: 29
Effective length of query: 27
Effective length of database: 15,521,595
Effective search space: 419083065
Effective search space used: 419083065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 149 (62.0 bits)