BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0366800 Os03g0366800|Os03g0366800
(499 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0366800 Cyclin-like F-box domain containing protein 867 0.0
Os06g0300900 169 6e-42
Os10g0566300 Cyclin-like F-box domain containing protein 166 4e-41
Os01g0637100 Cyclin-like F-box domain containing protein 137 1e-32
Os09g0448100 Cyclin-like F-box domain containing protein 108 6e-24
Os12g0164300 Cyclin-like F-box domain containing protein 97 2e-20
Os12g0568600 87 3e-17
Os09g0447600 78 2e-14
Os04g0385100 66 5e-11
>Os03g0366800 Cyclin-like F-box domain containing protein
Length = 499
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/499 (88%), Positives = 440/499 (88%)
Query: 1 MDLKKANNNSNKRQRKXXXXXXXXXGPDNGGLPPRRSSRIAERKNVVKRARHRHDGEQPA 60
MDLKKANNNSNKRQRK GPDNGGLPPRRSSRIAERKNVVKRARHRHDGEQPA
Sbjct: 1 MDLKKANNNSNKRQRKSTTTTTSVVGPDNGGLPPRRSSRIAERKNVVKRARHRHDGEQPA 60
Query: 61 TSRCSQLSGEMPDEMVLELLARLPVKSLLRLRAVSRPWRAAICAPSFVXXXXXXXXXXXX 120
TSRCSQLSGEMPDEMVLELLARLPVKSLLRLRAVSRPWRAAICAPSFV
Sbjct: 61 TSRCSQLSGEMPDEMVLELLARLPVKSLLRLRAVSRPWRAAICAPSFVAAHLRRSAARHR 120
Query: 121 WEPTLLIAPQLLDDAERDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVGAGASASLIFRRS 180
WEPTLLIAPQLLDDAERDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVGAGASASLIFRRS
Sbjct: 121 WEPTLLIAPQLLDDAERDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVGAGASASLIFRRS 180
Query: 181 FHGEFRSVFQLSHCNGLMLVPTDTTSYVVNPATRSAIALPESXXXXXXXALPQATGFGHD 240
FHGEFRSVFQLSHCNGLMLVPTDTTSYVVNPATRSAIALPES ALPQATGFGHD
Sbjct: 181 FHGEFRSVFQLSHCNGLMLVPTDTTSYVVNPATRSAIALPESRRRRRRRALPQATGFGHD 240
Query: 241 PHTGTYKVARCFVRSGDGVVPESTTTGMELCTIGGNGGVSVGSCWREIVADTPYPVLVWH 300
PHTGTYKVARCFVRSGDGVVPESTTTGMELCTIGGNGGVSVGSCWREIVADTPYPVLVWH
Sbjct: 241 PHTGTYKVARCFVRSGDGVVPESTTTGMELCTIGGNGGVSVGSCWREIVADTPYPVLVWH 300
Query: 301 TATFFRGALFFTTCHDTAARPPQESRLLRLCLRDETFSVVAXXXXXXXXFLHEAFHLSEL 360
TATFFRGALFFTTCHDTAARPPQESRLLRLCLRDETFSVVA FLHEAFHLSEL
Sbjct: 301 TATFFRGALFFTTCHDTAARPPQESRLLRLCLRDETFSVVAPPPPCRPPFLHEAFHLSEL 360
Query: 361 NGVLCLAHAAGAGDEGTSTSSSVVIWMTEDGVSPRWSKRCVFTSTSMFIPIALFHHXXXX 420
NGVLCLAHAAGAGDEGTSTSSSVVIWMTEDGVSPRWSKRCVFTSTSMFIPIALFHH
Sbjct: 361 NGVLCLAHAAGAGDEGTSTSSSVVIWMTEDGVSPRWSKRCVFTSTSMFIPIALFHHGGGG 420
Query: 421 XXXVIGKRXXXXXXXXXXXXXXXXSRIGEGKEEEKQVVCLNGMTYHDDEQGRHTVVVGSS 480
VIGKR SRIGEGKEEEKQVVCLNGMTYHDDEQGRHTVVVGSS
Sbjct: 421 GGGVIGKRGDLLFFLGDDDDGEDESRIGEGKEEEKQVVCLNGMTYHDDEQGRHTVVVGSS 480
Query: 481 WENLHYYKLIPYTESLVPI 499
WENLHYYKLIPYTESLVPI
Sbjct: 481 WENLHYYKLIPYTESLVPI 499
>Os06g0300900
Length = 374
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 157/332 (47%), Gaps = 43/332 (12%)
Query: 64 CSQLSGEMPDEMVLELLARLPVKSLLRLRAVSRPWRAAICAPSFVXXXXXXXXXXX---- 119
C + +P+E+V E+L RLPVK+L R ++V R WRA I PSF+
Sbjct: 40 CHPGASSLPNELVYEILLRLPVKTLSRSKSVCRAWRATISNPSFITTHLKQQQQSAVSRH 99
Query: 120 XWEPTLLIAPQLLDDA-ERDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVGAGASASLIFR 178
+P+ LI P LD + + W T FS+ I Y+W+ +TE++ A L+
Sbjct: 100 EQKPSFLITPHTLDSMIDDEEPWPTTFSNIITFYRWQ-----ETEQD------DAHLVRA 148
Query: 179 RSFHGEFRSVFQLSHCNGLMLVPTDTTSYVVNPAT--RSAIALPESXXXXXXXALPQATG 236
+ HGEFRSV+ +SH +GL++ PT+T YV NPAT + LP+ Q G
Sbjct: 149 TNLHGEFRSVYGMSHYDGLVIFPTNTRLYVFNPATGKGDVLKLPDGQKSRF-----QTAG 203
Query: 237 FGHDPHTGTYKVARCFVRSGDGVVPESTTTGMELCTIGGNGGVSVGSCWREIVADTPYPV 296
G D T TYK+ R F RS D GME+ TIG SCWR I D PYPV
Sbjct: 204 LGLDLGTNTYKIVRSFDRSIDFNQWAHDAAGMEVFTIGNR-----DSCWRTIAEDPPYPV 258
Query: 297 LVWHTATFFRGALFFTTCHD--TAARPPQESRLLRLCLRDETFSVVAXXXXXXXXFLHEA 354
+F+G+L++ C + PP LR L+DETF +V
Sbjct: 259 TA--DPMYFKGSLYWHICKELLQEGSPPPPQGFLRFDLQDETFGLVLHDVVSPSD--ETR 314
Query: 355 FHLSELNGVLCLAHAAGAGDEGTSTSSSVVIW 386
L EL G LCLA G + +VIW
Sbjct: 315 LDLVELGGELCLAQYLG---------TEMVIW 337
>Os10g0566300 Cyclin-like F-box domain containing protein
Length = 445
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 144/466 (30%), Positives = 191/466 (40%), Gaps = 72/466 (15%)
Query: 49 RARHRHDGEQPATSRCSQLSGEMPDEMVLELLARLPVKSLLRLRAVSRPWRAAICAPSFV 108
R+R+R + +P+E+V+E+LARLPVKSLLR ++V R WRA I PSF+
Sbjct: 33 RSRNRKRKRTVVPPAAATFPDLLPEEIVVEILARLPVKSLLRFKSVCRGWRAIISEPSFI 92
Query: 109 XXXXXXXXXXXXWEPTLLIAPQLL---DDAERDI----IWLTNFSDTIRLYQWRRRRNGQ 161
EP++LI+P L D + + W NFS I YQW+R G
Sbjct: 93 RTQLQCSASKQ--EPSILISPHTLLGRCDIQPPVGGLGDWPNNFSTQISFYQWQR---GA 147
Query: 162 TEEEQVGAGASASLIFRRSFHGEFRSVFQLSHCNGLMLVPTDTTSYVVNPATRSAIALPE 221
+ + A A + EF V +HC+GL+L PTDT Y+ NPATR I LP+
Sbjct: 148 SIARFMDATAFPA--------NEFHLVCHFAHCDGLVLAPTDTNLYLFNPATRDTITLPD 199
Query: 222 SXXXXXXXALPQ----ATGFGHDPHTGTYKVARCFVRSGDGVVPESTTTGMELCTIGGNG 277
A G G DP T YKV R F RS D + GME+ T+G G
Sbjct: 200 GHGDNHHHGTEMEACYAAGLGLDPVTRKYKVVRAFYRSMDPI-----RMGMEVFTVGETG 254
Query: 278 GVSVGSCWREIVADTPYPVLVWHTATFFRGALFFTTCHDTAARPPQESR---LLRLCLRD 334
G WRE V D PYPV W TA G F + R P ++ LL L+D
Sbjct: 255 A---GCGWRETVTDPPYPVSRWLTAFTVNGGYLF--WYMDRFRYPNDTLHGGLLWFSLQD 309
Query: 335 ETFSVVAXXXXXXXXFLHEAFHLSELNGVLCLAHAAGAGDEGTSTSSSVVIWMTEDGVSP 394
+ F V L + L+G LC+ HA S + V IW T
Sbjct: 310 QAFRVTLLPHSLDPA-LDDKVRPDVLHGELCVLHA-------NSDTMPVTIWTTNSPSFD 361
Query: 395 RWSKR-CVFTSTSMFIPIALFHHXXXXXXXVIGKRXXXXXXXXXXXXXXXXSRIGEGKEE 453
W +R C++ S + R +E
Sbjct: 362 DWERRYCIYVS------------------RLCHPMGLLGDGGMLLWAKHTIHRYDLWSDE 403
Query: 454 EKQVVCLNGMTYHDDEQGRHTVVVGSSWENLHYYKLIPYTESLVPI 499
V L G+ Y R W+NL + ++PYTESLV I
Sbjct: 404 LTAVCELGGIRYQGGRPPR--------WKNLFNFSVMPYTESLVRI 441
>Os01g0637100 Cyclin-like F-box domain containing protein
Length = 487
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 156/343 (45%), Gaps = 45/343 (13%)
Query: 77 LELLARLPVKSLLRLRAVSRPWRAAICAPSFVXXXXXXXXXXXXWEPTLLIAPQLLDDAE 136
+E+ RLP K+L R ++V + W I P F+ EP+ + LD+
Sbjct: 1 MEIFIRLPAKTLARFKSVCKAWHTIISEPFFIRSHLRHSAFKHKQEPSFFVILHALDN-- 58
Query: 137 RDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVGAGASASLIFRRSFHGEFRSVFQLSHCNG 196
++ +T FS+ + +++W+ +GQ +A L+ FHGE++ + ++SHC+G
Sbjct: 59 --VVEIT-FSNNVPVFRWK---DGQ---------GNACLVHAMDFHGEYQIINKMSHCDG 103
Query: 197 LMLVPTDTTSYVVNPATRSAIALPESXXXXXXXALPQATGFGHDPHTGTYKVARCFVRSG 256
L+L PTDT YV+N T + LP++ L QATG G DP T YKVAR F RS
Sbjct: 104 LVLFPTDTKLYVINLTTSDVLRLPDN---QESDTLRQATGLGLDPRTNMYKVARYFYRSV 160
Query: 257 DGVVPESTTTGMELCTIGGNGGVSVGSCWREIVADTPYPVLVWHTATFFRGALFFTTCHD 316
D + + ME+ +IG + + WRE PYPV + +G LF+ D
Sbjct: 161 DHTI-GTYDAAMEVFSIGQD------AFWRETSEVPPYPVRSMESPIHSKGYLFWNI--D 211
Query: 317 TAARPPQESRLLRLCLRDETFSVVAXXXXXXXXFLHEAFHLSELNGVLCLAHAAGAGDEG 376
Q L L DETFS++ H +SEL+G LC+ G
Sbjct: 212 ERFLKGQSRGFLCFSLEDETFSLIP-HPCPYLPLNHGTSLVSELDGELCV---------G 261
Query: 377 TSTSSSVVIWMTEDGVSPRWSKRC---VFTSTSMFIPIALFHH 416
S +WM +W +R V ++IP+ + H
Sbjct: 262 LFISGQQQLWMYNGN---QWDQRFSINVPGPNDLYIPLDILPH 301
>Os09g0448100 Cyclin-like F-box domain containing protein
Length = 432
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 141/332 (42%), Gaps = 50/332 (15%)
Query: 71 MPDEMVLELLARLPVKSLLRLRAVSRPWRAAICAPSFVXXXXXXXXXXXXWEPTLLIAPQ 130
+PD+++ +L+ LP KSL+R ++V + W A I +P F P++L+ P
Sbjct: 68 IPDDVMFNILSWLPSKSLIRFKSVCKAWHAMISSPCFTDAHLECSKR----NPSILMVPG 123
Query: 131 LLDDAERDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVGAGASASLIFRRSFHGEFRSVFQ 190
+ E N + + LY++ G + L+ ++F +
Sbjct: 124 AYEKQEDG----ENIAFMMVLYKYH-------------GGKTMELVHMQNFPLGIGVWTR 166
Query: 191 LSHCNGLMLVPT-DTTSYVVNPATRSAIALPESXXXXXXXALPQATGFGHDPHTGTYKVA 249
HCNGL+L+PT + + NP+TR + LP+ GFG DPH+ YKVA
Sbjct: 167 PVHCNGLLLIPTMNLEMMICNPSTRQIVFLPKVSGNICTGT---RAGFGFDPHSNKYKVA 223
Query: 250 RCFVRSGDGVVPESTTTGMELCTIGGNGGVSVGSCWREIVADTPYPVLVWHTATFFRGAL 309
R F + + E+ T+G N WR+ D PYP+ T +GA+
Sbjct: 224 RSFYQRDSET--QELVCKFEVLTLGTNA-------WRQ-TEDPPYPIDAL-TPVHVKGAI 272
Query: 310 FFTTCHDTAARPPQESRLLRLCLRDETFSVVAXXXXXXXXFLHEAFHLSELNGVLCLAHA 369
++ C PP + LR CL DE FS+ ++ +E+ G LC A
Sbjct: 273 YWIVCSSLCPDPP--NAFLRFCLTDEKFSLFPCPPSNV-----KSVRFTEVEGELCCACF 325
Query: 370 AGAGDEGTSTSSSVVIWMTEDGVSPRWSKRCV 401
S + ++ IW G + W++R V
Sbjct: 326 F-------SETLALEIWNCSGGQNLEWTRRYV 350
>Os12g0164300 Cyclin-like F-box domain containing protein
Length = 414
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 149/368 (40%), Gaps = 82/368 (22%)
Query: 71 MPDEMVLELLARLPVKSLLRLRAVSRPWRAAICAPSFVXXXXXXXXXXXXWEPTLLIAPQ 130
+PDE++ ++L RLP KSL+R ++V + W A I +P F+ +LL+AP
Sbjct: 35 IPDEVMFDVLLRLPSKSLMRFKSVCKAWHAMISSPIFINAHLEWSKLKPS---SLLMAPG 91
Query: 131 LLDDAERDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVG----AGASASLIFRRSFHGEFR 186
+++++NGQ +G G + +++ F +F
Sbjct: 92 F----------------------YQKQKNGQNIAFLMGLYKYQGGNNNVVHLHDFPRDFP 129
Query: 187 SVFQL----SHCNGLMLVPTDTTSYVV-NPATRSAIALPESXXXXXXXALPQATGFGHDP 241
V HC+GL+LV + ++ NP+TR ++LP+ GFG DP
Sbjct: 130 QVLDTWTRPVHCDGLLLVSNMSKKMIIYNPSTREIVSLPKGSRNLHKGT---GIGFGFDP 186
Query: 242 HTGTYKVARCFVRSGDGVVPESTTTGMELCT--IGGNGGVSVGSCWREIVADTPYPVLVW 299
+ YKVAR F + D T M +C + G ++V WR+ D PYP+
Sbjct: 187 RSSKYKVARVFYQRDD-------KTSMLVCKFEVLTLGTINV---WRQ-TEDPPYPIGK- 234
Query: 300 HTATFFRGALFFTTCHDTAARPPQESRLLRLCLRDETFSVVAXXXXXXXXFLHEAFHLSE 359
T +GA+++ T+ P + L+R CL DE FS+ L
Sbjct: 235 STPVHVKGAIYWMVSR-TSLCPDPPNTLVRFCLTDEKFSLFPCPCNVKPSCL-------- 285
Query: 360 LNGVLCLAHAAGAGDE-----GTSTSSSVVIW-MTEDGVSPRWSKRCVFTSTSMFI---- 409
G GDE S + IW + G P W++RC I
Sbjct: 286 ----------TGLGDELYCGYFFSQPLQLEIWGCSVVGQKPEWTRRCALQIPPDVIKRPV 335
Query: 410 --PIALFH 415
P+ +FH
Sbjct: 336 ASPLVVFH 343
>Os12g0568600
Length = 465
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 149/368 (40%), Gaps = 48/368 (13%)
Query: 71 MPDEMVL-ELLARLPVKSLLRLRAVSRPWRAAICA-PSFVXXXXXXXXXXXXWEPTLLIA 128
+PD++V E+L RLP +SL R +V WRAAI PS + LL+
Sbjct: 15 LPDDLVADEILTRLPARSLARFASVCGAWRAAISGDPSSFLRRRRKKEHSSSF---LLLL 71
Query: 129 PQLLDDAERDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVGAGASASLIFRRSFHGEFRSV 188
L++DAER + FS+ + Y+ R +G G A + S G+
Sbjct: 72 YALVEDAERRLA----FSNHVPFYRLRWPDDG---------GDGAPQLVHVSVFGDGGEE 118
Query: 189 FQLS---HCNGLMLVPTDTTSYVVNPATRSAIALPESXXXXXXXALPQATGFGHDPHTGT 245
LS C+GL+L+P +V+NPAT + LP+S A +TG G D T T
Sbjct: 119 PTLSLPRTCDGLVLLPNGDDVHVINPATGDVLTLPQS--SRVAAAADHSTGLGLDTRTNT 176
Query: 246 YKVARCFVRSGDGVVPESTTTG---MELCTIGGNGGVSVGSCWRE--IVADTPYPVLVWH 300
YKVAR S + G ME+ TIG + WRE YPV
Sbjct: 177 YKVARYIHLSTAAAAAAAEDDGAAVMEVFTIGHGD----AAAWRETTTPPPPSYPVCHVR 232
Query: 301 TATFFRGALFFTTC--HDTAARPPQESRLLRLCLRDETFSVV---------AXXXXXXXX 349
TA RG LF+ AA LLR L ETF+VV
Sbjct: 233 TAIHSRGNLFWKLQLRRSPAAAAAGSFLLLRFNLAHETFTVVHHPRPPSHLPSADQNGEP 292
Query: 350 FLHEAFHLSELNGVLCLAHAAGAGDEGTSTSSSVVIWMTEDGVSPRWSKR---CVFTSTS 406
LSEL+G LCL E S++ +D +W +R V +
Sbjct: 293 PPPPPPLLSELDGELCLGLLVSGRQELWLYSNNGGGGGGDDRW--QWEQRFSIAVSGPDA 350
Query: 407 MFIPIALF 414
M++P+ +
Sbjct: 351 MYLPLGVL 358
>Os09g0447600
Length = 326
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 38/227 (16%)
Query: 71 MPDEMVLELLARLPVKSLLRLRAVSRPWRAAICAPSFVXXXXXXXXXXXXWEPTLLIAPQ 130
+P++++ ++L+ LP KSL+R R+V + W A I + FV P+LL+ P
Sbjct: 36 IPEDVLFKILSWLPSKSLIRFRSVCKAWHATISSSRFVNAHLECSKQ----RPSLLVIPG 91
Query: 131 LLDDAERDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVGAGASASLIFRRSFHGEFRSVFQ 190
+ + N + + LY+++ +++ + F R +
Sbjct: 92 SFEMKKNG----ENIAFLMSLYKYQ----------------DPNIMHLQDFPRGIRKWIR 131
Query: 191 LSHCNGLMLVPTDTTSYVV-NPATRSAIALPESXXXXXXXALPQATGFGHDPHTGTYKVA 249
HC+GL+L+ T ++ NP+TR ++LPE GFG DPH+ YKVA
Sbjct: 132 PVHCDGLLLISTRKHKMMICNPSTREIVSLPEGSHSLCGG---MGLGFGFDPHSNKYKVA 188
Query: 250 RCFVRSGDGVVPESTTTGMELCTIGGNGGVSVGSCWREIVADTPYPV 296
R F + + E+ T+G + WR+ D PYP+
Sbjct: 189 RAFYQRDYPTTRQ--VCKFEVLTLGTDA-------WRQ-TEDPPYPI 225
>Os04g0385100
Length = 524
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 125/312 (40%), Gaps = 35/312 (11%)
Query: 70 EMPDEMVL-ELLARLPVKSLLRLRAVSRPWRAAICAPSFVXXXXXXXXXXXXWEPTLLIA 128
E+P+++++ E+L RLPVKSLLR R+V R WR A+ P+FV T+L
Sbjct: 2 EIPNDLLICEVLTRLPVKSLLRFRSVCRSWRDAVADPAFVRRHLELSRAATPPSTTVLAV 61
Query: 129 PQLLDDAERDIIWLTNFSDTIRLYQWRRRRNGQTEEEQVGAGASASLIFRRSFHGEFRSV 188
+D D D + + R R GQ+ A A L+ + +
Sbjct: 62 HTRMDHDPDD---RAAPEDVVSFH---RVRPGQSPAAA--AAAIVELMHEEAMECAGIHL 113
Query: 189 FQLSHCNGLMLV-PTDTTSYVVNPATRSAIALPESXXXXXXXALPQATGFGHDPHTGTYK 247
F SHC+GL+ V T V P R LP + + + G DP TG Y
Sbjct: 114 FA-SHCDGLVAVAATRGEDLRVQP--RHQGVLPPAAGSRNGPS-KETAALGFDPCTGRYV 169
Query: 248 VARCFVRSGDGVVPESTTTGMELCTIGGNG--------GVSVGSCWREIVADTPYPVLVW 299
VARCF R D + T ++ N G S W V TP ++
Sbjct: 170 VARCFFRR-DVYYRDEDTGVLQYLEYDINDIVHQVFVLGPSGSGDWEATV--TPPCIIYT 226
Query: 300 HTATFFRGALFFTTCHDT-----AARPPQESRLLRLCLRDETFSVVAXXXXXXXXFLHEA 354
+ G F+ HD A P + L+R + D TF++V F+
Sbjct: 227 NLPAACAGGAFYWVAHDKSDGTFAVECP--NCLVRFAMNDGTFTIVP--LPQGVTFMDVD 282
Query: 355 FH-LSELNGVLC 365
F +SEL G LC
Sbjct: 283 FDSISELGGELC 294
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,141,800
Number of extensions: 714055
Number of successful extensions: 2200
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 2185
Number of HSP's successfully gapped: 9
Length of query: 499
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 394
Effective length of database: 11,553,331
Effective search space: 4552012414
Effective search space used: 4552012414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)