BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0352800 Os03g0352800|AK059673
         (135 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0352800  Similar to Acyl carrier protein 1 (EC 1.6.5.3)...   222   7e-59
Os05g0377000  Similar to Acyl carrier protein (ACP)               133   4e-32
Os07g0222800  Acyl carrier protein-like protein                   106   6e-24
Os11g0521500  Similar to Acyl carrier protein, chloroplast p...    65   2e-11

>Os03g0352800 Similar to Acyl carrier protein 1 (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 135

 Score =  222 bits (565), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 114/135 (84%)

Query: 1   MAGARSLLLRHXXXXXXXXXXXXXXXXXXXXXLREALCARRWMSSEEAKGSFLDKAEVTE 60
           MAGARSLLLRH                     LREALCARRWMSSEEAKGSFLDKAEVTE
Sbjct: 1   MAGARSLLLRHLRVAVAPSSSSPAASLRPVVALREALCARRWMSSEEAKGSFLDKAEVTE 60

Query: 61  RIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPDNEADKIDS 120
           RIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPDNEADKIDS
Sbjct: 61  RIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPDNEADKIDS 120

Query: 121 IKVAVDFIASHPQAK 135
           IKVAVDFIASHPQAK
Sbjct: 121 IKVAVDFIASHPQAK 135



>Os05g0377000 Similar to Acyl carrier protein (ACP)
          Length = 148

 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 79/93 (84%), Gaps = 4/93 (4%)

Query: 41  RWMSS---EEAKGSFLDKAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVE 97
           R +SS   E +KGSFLDK EV +RIV VV+NFQK++ P+KVTP+AHF+ DLGLDSLD VE
Sbjct: 31  RLLSSATEEGSKGSFLDKGEVADRIVSVVKNFQKVE-PSKVTPNAHFQKDLGLDSLDTVE 89

Query: 98  VVMALEEEFGFEIPDNEADKIDSIKVAVDFIAS 130
           +VMA EEEFGFEIPDNEA+KIDSIK AVDF+ S
Sbjct: 90  IVMAFEEEFGFEIPDNEAEKIDSIKTAVDFMMS 122



>Os07g0222800 Acyl carrier protein-like protein
          Length = 131

 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 74/98 (75%), Gaps = 8/98 (8%)

Query: 41  RW----MSSEEAKGSFLDKAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAV 96
           RW    MSS +A    L + EV +R++ V++   K+D P+KV+P+AHF+ DLGLDSLD V
Sbjct: 37  RWLARPMSSHDA---HLTRDEVVDRLLDVLKCHPKVD-PSKVSPEAHFEKDLGLDSLDTV 92

Query: 97  EVVMALEEEFGFEIPDNEADKIDSIKVAVDFIASHPQA 134
           EVVMA+EEEF  EIPD EADKIDS+ +A++++A+HP A
Sbjct: 93  EVVMAIEEEFKLEIPDQEADKIDSLPLAIEYVANHPMA 130



>Os11g0521500 Similar to Acyl carrier protein, chloroplast precursor (ACP)
           (ACP05) (Clone 29C08)
          Length = 148

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 55  KAEVTERIVKVVRNFQKIDDPAKVTPDAHFKNDLGLDSLDAVEVVMALEEEFGFEIPDNE 114
           KAE   +++++V+    + + AK+ P++ F  +LG DSLD VE+VMALEEEFG  + ++ 
Sbjct: 61  KAETVGKVMQIVKQQLALGEEAKLAPESQF-TELGADSLDTVEIVMALEEEFGITVEEDN 119

Query: 115 ADKIDSIKVAVDFI 128
           A  I +I+ A D I
Sbjct: 120 AQSITTIQDAADLI 133



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,418,042
Number of extensions: 112248
Number of successful extensions: 341
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 4
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)