BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0335600 Os03g0335600|AK100513
(572 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0335600 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) ... 1095 0.0
Os03g0694900 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) ... 875 0.0
Os10g0506200 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) ... 808 0.0
AK110466 615 e-176
AK110360 468 e-132
AK119837 377 e-105
Os03g0111700 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) ... 234 1e-61
Os02g0778200 Aminoacyl-tRNA synthetase, class I family protein 85 2e-16
>Os03g0335600 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)
(ValRS)
Length = 572
Score = 1095 bits (2832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/572 (91%), Positives = 526/572 (91%)
Query: 1 ENVRTETEEKSEVLCXXXXXXXXXXXXXXXXXXXMLQAQPALDVLKKVEKKHRGKAVEDE 60
ENVRTETEEKSEVLC MLQAQPALDVLKKVEKKHRGKAVEDE
Sbjct: 1 ENVRTETEEKSEVLCLQAKEKEEKRLKAKQKEAAMLQAQPALDVLKKVEKKHRGKAVEDE 60
Query: 61 NPEDFIDQDTPNGQKKLLAPQMANQYCPSTVEKSWYAWWESSGYFRADSASTKPPFVIVM 120
NPEDFIDQDTPNGQKKLLAPQMANQYCPSTVEKSWYAWWESSGYFRADSASTKPPFVIVM
Sbjct: 61 NPEDFIDQDTPNGQKKLLAPQMANQYCPSTVEKSWYAWWESSGYFRADSASTKPPFVIVM 120
Query: 121 PPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRERN 180
PPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRERN
Sbjct: 121 PPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRERN 180
Query: 181 LTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGASLDWSREAFTMDEQRSNAVTEAFVR 240
LTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGASLDWSREAFTMDEQRSNAVTEAFVR
Sbjct: 181 LTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGASLDWSREAFTMDEQRSNAVTEAFVR 240
Query: 241 LHKEGLIYRDNRLVNWDCTLLTSISEIEVDHIDLKEETMLKIPGYATPVQFGVLISFAYP 300
LHKEGLIYRDNRLVNWDCTLLTSISEIEVDHIDLKEETMLKIPGYATPVQFGVLISFAYP
Sbjct: 241 LHKEGLIYRDNRLVNWDCTLLTSISEIEVDHIDLKEETMLKIPGYATPVQFGVLISFAYP 300
Query: 301 LEEGLGEIVVATTRIETMLGDTAIAVHPEDKRYMHLHGRYAVHPFNGRKLKIICDAEIVD 360
LEEGLGEIVVATTRIETMLGDTAIAVHPEDKRYMHLHGRYAVHPFNGRKLKIICDAEIVD
Sbjct: 301 LEEGLGEIVVATTRIETMLGDTAIAVHPEDKRYMHLHGRYAVHPFNGRKLKIICDAEIVD 360
Query: 361 PSFGTGAVKIAPAHDPNDFEVGRRNNLQFINILTDDGKINSNGGAQFEGMPRFTARICII 420
PSFGTGAVKIAPAHDPNDFEVGRRNNLQFINILTDDGKINSNGGAQFEGMPRFTARICII
Sbjct: 361 PSFGTGAVKIAPAHDPNDFEVGRRNNLQFINILTDDGKINSNGGAQFEGMPRFTARICII 420
Query: 421 EXXXXXXXXXXXXNTETSLGICSRTNDIVEPMIKSPQWFVNCNTMAKVALDAVRSKRIEI 480
E NTETSLGICSRTNDIVEPMIKSPQWFVNCNTMAKVALDAVRSKRIEI
Sbjct: 421 EALKAKGLYKGAKNTETSLGICSRTNDIVEPMIKSPQWFVNCNTMAKVALDAVRSKRIEI 480
Query: 481 IPPQYEQDWYRWLENIRDWCVSRQHWWGHRVPAWYVTLEDDQEKTLGSDNDRWIXXXXXX 540
IPPQYEQDWYRWLENIRDWCVSRQHWWGHRVPAWYVTLEDDQEKTLGSDNDRWI
Sbjct: 481 IPPQYEQDWYRWLENIRDWCVSRQHWWGHRVPAWYVTLEDDQEKTLGSDNDRWIVAKSES 540
Query: 541 XXXXXXXXXYPGKKFILNQDPDVLDTCSRNWT 572
YPGKKFILNQDPDVLDTCSRNWT
Sbjct: 541 AASVEAQKSYPGKKFILNQDPDVLDTCSRNWT 572
>Os03g0694900 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)
(ValRS)
Length = 1054
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/531 (79%), Positives = 457/531 (86%), Gaps = 1/531 (0%)
Query: 36 LQAQPALDVLKKVEKKHRGKAVEDENPEDFIDQDTPNGQKKLLAPQMANQYCPSTVEKSW 95
LQAQ A D KK EKK R KAVEDENPEDFID DTP+GQKK LA QMA QY P+ VEKSW
Sbjct: 46 LQAQAASDGPKKSEKKQRKKAVEDENPEDFIDPDTPHGQKKFLASQMAKQYSPTAVEKSW 105
Query: 96 YAWWESSGYFRADSASTKPPFVIVMPPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNAL 155
Y+WWESSGYF AD+AS+KPPFVIV+PPPNVTGALHIGHALTVAIED+MIRWRRMSGYN L
Sbjct: 106 YSWWESSGYFGADAASSKPPFVIVLPPPNVTGALHIGHALTVAIEDSMIRWRRMSGYNTL 165
Query: 156 WVPGVDHAGIATQVVVEKKLMRERNLTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGA 215
WVPGVDHAGIATQVVVEKKLMRERNLTRHDIG + FV EVLKWK+ YGGTILNQL RLGA
Sbjct: 166 WVPGVDHAGIATQVVVEKKLMRERNLTRHDIGREEFVSEVLKWKDEYGGTILNQLRRLGA 225
Query: 216 SLDWSREAFTMDEQRSNAVTEAFVRLHKEGLIYRDNRLVNWDCTLLTSISEIEVDHIDLK 275
SLDWSRE FTMD+ RS AVTEAFVRL+K+GLIYRD RLVNWDCTL T+IS++EVD++++K
Sbjct: 226 SLDWSRECFTMDKPRSKAVTEAFVRLYKQGLIYRDYRLVNWDCTLRTAISDVEVDYLEIK 285
Query: 276 EETMLKIPGYATPVQFGVLISFAYPLEEGLGEIVVATTRIETMLGDTAIAVHPEDKRYMH 335
EETMLK+PGY T VQFGVLISFAYPLEEGLGEI+VATTRIETMLGDTAIAVHPED RY H
Sbjct: 286 EETMLKVPGYNTTVQFGVLISFAYPLEEGLGEIIVATTRIETMLGDTAIAVHPEDGRYKH 345
Query: 336 LHGRYAVHPFNGRKLKIICDAEIVDPSFGTGAVKIAPAHDPNDFEVGRRNNLQFINILTD 395
LHGRYA+HPFNGRKLKIICDAE+VDP+FGTGAVKI PAHDPNDFEVG+R+NL+FINI TD
Sbjct: 346 LHGRYAIHPFNGRKLKIICDAELVDPTFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTD 405
Query: 396 DGKINSNGGAQFEGMPRFTARICIIEXXXXXXXXXXXXNTETSLGICSRTNDIVEPMIKS 455
DGKIN+NGGAQF G+PRFTAR+ +IE E SLG+CSRTND+VEPMIK
Sbjct: 406 DGKINNNGGAQFVGIPRFTARVAVIEALKAKGLYKETKKNEMSLGVCSRTNDVVEPMIK- 464
Query: 456 PQWFVNCNTMAKVALDAVRSKRIEIIPPQYEQDWYRWLENIRDWCVSRQHWWGHRVPAWY 515
PQWFVNCNTMA+ +DAVRSKRIEIIP QYEQDWYRWL NIRDWC+SRQ WWGHRVPAWY
Sbjct: 465 PQWFVNCNTMAQAGIDAVRSKRIEIIPQQYEQDWYRWLANIRDWCISRQLWWGHRVPAWY 524
Query: 516 VTLEDDQEKTLGSDNDRWIXXXXXXXXXXXXXXXYPGKKFILNQDPDVLDT 566
V LEDDQEK LGS N RWI YPGKKF L+QDPDVLDT
Sbjct: 525 VILEDDQEKILGSANGRWIVARNESEANLEAQQKYPGKKFELHQDPDVLDT 575
>Os10g0506200 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)
(ValRS)
Length = 1042
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/531 (72%), Positives = 443/531 (83%), Gaps = 1/531 (0%)
Query: 36 LQAQPALDVLKKVEKKHRGKAVEDENPEDFIDQDTPNGQKKLLAPQMANQYCPSTVEKSW 95
LQAQ A D KK +KK + K DENPEDF+D DTP GQKKLLA QMA QY P+ VEKSW
Sbjct: 38 LQAQAASDETKKSDKKQKKKGTPDENPEDFVDPDTPAGQKKLLASQMAKQYNPAAVEKSW 97
Query: 96 YAWWESSGYFRADSASTKPPFVIVMPPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNAL 155
Y+WWESS YF AD+ S+KPPFVI++PPPNVTG LHIGHA+TVAIEDAMIRWRRMSGYNAL
Sbjct: 98 YSWWESSQYFVADATSSKPPFVIILPPPNVTGVLHIGHAITVAIEDAMIRWRRMSGYNAL 157
Query: 156 WVPGVDHAGIATQVVVEKKLMRERNLTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGA 215
WVPG+DHAGIATQVVVEK+LMR+RNL+RHD+G D F+ EVL+WK+++GGTIL QL LGA
Sbjct: 158 WVPGMDHAGIATQVVVEKRLMRDRNLSRHDLGRDKFLLEVLQWKDQHGGTILKQLRTLGA 217
Query: 216 SLDWSREAFTMDEQRSNAVTEAFVRLHKEGLIYRDNRLVNWDCTLLTSISEIEVDHIDLK 275
SLDWSRE FTMDE+RS AVTEAF+RLHKEGLIYRDNR+VNWDC+L T+IS+IEVD+ +L
Sbjct: 218 SLDWSRECFTMDEKRSKAVTEAFIRLHKEGLIYRDNRIVNWDCSLRTAISDIEVDYCELT 277
Query: 276 EETMLKIPGYATPVQFGVLISFAYPLEEGLGEIVVATTRIETMLGDTAIAVHPEDKRYMH 335
EET+L++PG +T VQFGV+I+FAYPLEEGLGEI+VATTRIETMLGDTAIAVHP+D+RY
Sbjct: 278 EETLLEVPGCSTLVQFGVIINFAYPLEEGLGEIIVATTRIETMLGDTAIAVHPQDERYKR 337
Query: 336 LHGRYAVHPFNGRKLKIICDAEIVDPSFGTGAVKIAPAHDPNDFEVGRRNNLQFINILTD 395
LHG++A+HPFNGRKLKIICD+++VDPSFGTGAVKI PAHD +DF G+R+ L+FINI TD
Sbjct: 338 LHGKHALHPFNGRKLKIICDSKLVDPSFGTGAVKITPAHDLDDFNTGKRHKLEFINIFTD 397
Query: 396 DGKINSNGGAQFEGMPRFTARICIIEXXXXXXXXXXXXNTETSLGICSRTNDIVEPMIKS 455
DG IN NGG QFEGMPRFTAR II+ N + LG CSRT DIVEPM+K
Sbjct: 398 DGNINENGGPQFEGMPRFTARAAIIDALKAKGLYRGTENNKMRLGRCSRTKDIVEPMMK- 456
Query: 456 PQWFVNCNTMAKVALDAVRSKRIEIIPPQYEQDWYRWLENIRDWCVSRQHWWGHRVPAWY 515
PQWFV+C+TMAK ALDAV++KRIEIIP QYEQDWYRWLENIRDWC+SRQ WWGHR+PAWY
Sbjct: 457 PQWFVDCSTMAKAALDAVKTKRIEIIPIQYEQDWYRWLENIRDWCISRQLWWGHRIPAWY 516
Query: 516 VTLEDDQEKTLGSDNDRWIXXXXXXXXXXXXXXXYPGKKFILNQDPDVLDT 566
VTLEDD+EK +GS D WI YPGK + L+QDPDVLDT
Sbjct: 517 VTLEDDEEKDIGSYIDHWIIARNESDAILEAKQRYPGKNYKLDQDPDVLDT 567
>AK110466
Length = 983
Score = 615 bits (1587), Expect = e-176, Method: Compositional matrix adjust.
Identities = 290/498 (58%), Positives = 360/498 (72%), Gaps = 8/498 (1%)
Query: 75 KKLLAPQMANQYCPSTVEKSWYAWWESSGYFRADSASTKPPFVIVMPPPNVTGALHIGHA 134
KK +M Y P VE +WY WWE G+ + D S KPPF IV+PPPNVTGALHIGHA
Sbjct: 1 KKPTEGEMYKSYNPQMVEAAWYDWWERCGFSKPDPKSDKPPFTIVIPPPNVTGALHIGHA 60
Query: 135 LTVAIEDAMIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRERNLTRHDIGPDNFVCE 194
LT A++D ++RWRRMSGYN LWVPG DHAGIATQ VVEKKL +E +TRHD+G + F+ E
Sbjct: 61 LTNAVQDTIVRWRRMSGYNVLWVPGTDHAGIATQSVVEKKLQKEMGITRHDLGREKFLSE 120
Query: 195 VLKWKERYGGTILNQLHRLGASLDWSREAFTMDEQRSNAVTEAFVRLHKEGLIYRDNRLV 254
V KW + YGG I +QL R+G+S+DW R FTMDE RS AV EAFVR+ + G IYRDNRLV
Sbjct: 121 VFKWVDEYGGRICSQLRRMGSSVDWDRCVFTMDETRSRAVLEAFVRMFESGCIYRDNRLV 180
Query: 255 NWDCTLLTSISEIEVDHIDLKEETMLKIPGYATPVQFGVLISFAYPLEEGLGEIVVATTR 314
NWD L T++S+IEVD+ID+ T++ +PGY PV+FGVL SFAYPLE+G GEIVVATTR
Sbjct: 181 NWDARLRTAVSDIEVDYIDIPGRTLINVPGYEQPVEFGVLTSFAYPLEDGSGEIVVATTR 240
Query: 315 IETMLGDTAIAVHPEDKRYMHLHGRYAVHPFNGRKLKIICDAEIVDPSFGTGAVKIAPAH 374
ETMLGDTA+AVHPED+RY HLHG++ VHP + R++ II DAE+VD FGTGAVKI PAH
Sbjct: 241 PETMLGDTAVAVHPEDERYKHLHGKFVVHPVSQRRIPIITDAELVDMEFGTGAVKITPAH 300
Query: 375 DPNDFEVGRRNNLQFINILTDDGKINSNGGAQFEGMPRFTARICIIEXXXXXXXXXXXXN 434
DPNDF VG+R++L+FINIL D+G IN NGG F+G PRF ARI +++ +
Sbjct: 301 DPNDFLVGKRHSLEFINILDDNGNINDNGG-DFKGQPRFQARITVVDFLKQAGLYRGVHD 359
Query: 435 TETSLGICSRTNDIVEPMIKSPQWFVNCNTMAKVALDAVRSKRIEIIPPQYEQDWYRWLE 494
LGI SR+ D++EP++K PQW+V C MA + +AVR+ +EIIP ++E W+RWLE
Sbjct: 360 NPMRLGISSRSKDVIEPLLK-PQWWVACGDMAARSCEAVRNGTLEIIPKEFEAVWFRWLE 418
Query: 495 NIRDWCVSRQHWWGHRVPAWYVTLEDDQEKTLG------SDNDRWIXXXXXXXXXXXXXX 548
NIRDWC+SRQ WWGHR+PA+Y+TLE + + G D RW+
Sbjct: 419 NIRDWCISRQLWWGHRIPAYYITLEGETPEAAGVPGRPSEDMSRWVVGRSQEEAAAAAAA 478
Query: 549 XYPGKKFILNQDPDVLDT 566
YPGKKF L+QD DVLDT
Sbjct: 479 KYPGKKFELHQDEDVLDT 496
>AK110360
Length = 1055
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/536 (44%), Positives = 330/536 (61%), Gaps = 22/536 (4%)
Query: 44 VLKKVEKKHRGKAVEDENPEDFIDQDTPNGQKKLLAPQMANQYCPSTVEKSWYAWWESSG 103
+L+ V K + V ++ + + + KK + M Y P VEK WY WW+S
Sbjct: 1 MLRLVLKHASAQVVRNKARSTLLLRSVTSTAKKDTSHPMEESYSPGRVEKGWYDWWQSKE 60
Query: 104 YFRADSASTKPP----FVIVMPPPNVTGALHIGHALTVAIEDAMIRWRRMSGY--NALWV 157
YFR S T P F +V+PPPNVTG+LHIGHALTV++EDA++RW++M + W+
Sbjct: 61 YFRPKSDKTGTPSDKYFSMVVPPPNVTGSLHIGHALTVSMEDALVRWQKMRHVMQDVTWI 120
Query: 158 PGVDHAGIATQVVVEKKLMRERNLTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGASL 217
PG+DHAGIATQVVVEK+L + +N++RHD+G + F+ EV +WKE+YGG I+ QL R GA+L
Sbjct: 121 PGLDHAGIATQVVVEKQLKKSQNVSRHDLGRERFIEEVWRWKEQYGGRIVEQLKRTGAAL 180
Query: 218 DWSREAFTMDEQRSNAVTEAFVRLHKEGLIYRDNRLVNWDCTLLTSISEIEVDHIDLKEE 277
DWSRE FT+ + S AVTEAFVR+H EGLIYRD LVNW C L T IS+IEVD+ DL
Sbjct: 181 DWSREVFTLSPELSRAVTEAFVRMHDEGLIYRDTMLVNWCCALQTVISDIEVDYEDLPGR 240
Query: 278 TMLKIPGYATPVQFGVLISFAYPLE-----EGLGEIVVATTRIETMLGDTAIAVHPEDKR 332
TM++IPG V+FGVL YP+ + + V TTR ET+LGDTA+A+HP+D R
Sbjct: 241 TMIEIPGRQKKVEFGVLYKMRYPIRRRDDPSTVQHLEVCTTRPETILGDTALAIHPDDAR 300
Query: 333 YMHLH-GRYAVHPFNGRKLKIICDAEIVDPSFGTGAVKIAPAHDPNDFEVGRRNNLQFIN 391
Y H G AV+P G + I+CD+ VD FGTG VK+ PAHD D+++ +R+NL+ I+
Sbjct: 301 YSAFHQGWEAVNPLTGATMAIVCDSA-VDREFGTGVVKVTPAHDHVDYQMSQRHNLRVIS 359
Query: 392 ILTDDGKINSNGGAQFEGMPRFTARICIIEXXXXXXXXXXXXNTETSLGICSRTNDIVEP 451
+L G + ++G+ R+ AR I++ + L CSR+ D++EP
Sbjct: 360 VLNTTGHVIGT-NTPYDGLDRYEARARIVKELQSRDLLISTSSHAMRLARCSRSRDVLEP 418
Query: 452 MIKSPQWFVNCNTMAKVALDAVRSKRIEIIPPQYEQDWYRWLENIRDWCVSRQHWWGHRV 511
+++ PQW+V +A++A R+ ++ +P ++ DW+RWL+NIRDWC+SRQ WWGHRV
Sbjct: 419 LLQ-PQWYVRTAPLARIATHLSRTNQLRFVPEEFADDWHRWLDNIRDWCISRQLWWGHRV 477
Query: 512 PAWYVTLEDDQEKTLGSDNDRWIXXXXXXXXXXXXXXXYP-GKKFILNQDPDVLDT 566
PAW + Q RW+ Y + +L QDPDVLDT
Sbjct: 478 PAWQIIDGTYQGPA------RWVVARDMDEARDRAVKQYGVSRDCVLEQDPDVLDT 527
>AK119837
Length = 1072
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 222/490 (45%), Positives = 299/490 (61%), Gaps = 25/490 (5%)
Query: 81 QMANQYCPSTVEKSWYAWWESSGYFRADSASTKPPFVIVMPPPNVTGALHIGHALTVAIE 140
Q+ + P+ E+ Y WWE SG+F D A+ PPF I MPPPNVTG LH+GHA+ V ++
Sbjct: 130 QLPKTFDPAEREQQLYKWWEESGFFAPDPAAPGPPFTIPMPPPNVTGKLHMGHAMFVTLQ 189
Query: 141 DAMIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRERNLTRHDIGPDNFVCEVLKWKE 200
D M R+ RM+G LW+PG DHAGIATQ VVEK+L E + +R +G D F V +W+
Sbjct: 190 DVMARYARMAGKKTLWLPGTDHAGIATQNVVEKQLEAEGS-SRASLGRDAFEERVWQWRA 248
Query: 201 RYGGTILNQLHRLGASLDWSREAFTMDEQRSNAVTEAFVRLHKEGLIYRDNRLVNWDCTL 260
YGG I NQL RLGAS DWSRE FT+D+ S AV EAFVRL +GL+YR +VNW L
Sbjct: 249 EYGGFITNQLRRLGASCDWSRERFTLDQGLSEAVAEAFVRLADQGLVYRGAYMVNWSPRL 308
Query: 261 LTSISEIEVDHIDLKEETMLKIPGYATPVQFGVLISFAYPLEEG-LGEIV-VATTRIETM 318
T++S++EV++ EE PG+ L F YP+ + GE + VATTR ET+
Sbjct: 309 GTAVSDLEVEY---SEE-----PGH--------LYFFKYPMADSDSGEYLPVATTRPETI 352
Query: 319 LGDTAIAVHPEDKRYMHLHGRYAVHPFN-GRKLKIICDAEIVDPSFGTGAVKIAPAHDPN 377
LGDTA+AV+P D+RY GR P + GR + +I D E VD FGTGA+KI P HDPN
Sbjct: 353 LGDTAVAVNPADERYQAFVGRKVTVPMSGGRTVPVIAD-EYVDIEFGTGALKITPGHDPN 411
Query: 378 DFEVGRRNNLQFINILTDDGKINSNGGAQFEGMPRFTARICIIEXXXXXXXXXXXXNTET 437
D+E+G+R L+ INI+ DG +N+ GA + G+ RF AR + T
Sbjct: 412 DYEIGKRVGLETINIMNKDGSLNAAAGA-YAGLDRFVARERLWGDMEAAGLVIKKEPYTT 470
Query: 438 SLGICSRTNDIVEPMIKSPQWFVNCNTMAKVALDAVRSKRIEIIPPQYEQDWYRWLENIR 497
+ R+ ++VEP++ S QWFV +A+ AL AV RI+I+P ++E+ + WLENI+
Sbjct: 471 RVPRSQRSGEVVEPLV-SEQWFVKMEPLAQPALAAVADGRIKIMPERFEKIYNMWLENIK 529
Query: 498 DWCVSRQHWWGHRVPAWYV-TLEDDQEKTLGSDNDRWIXXXXXXXXXXXXXXXYPGKKFI 556
DWCVSRQ WWGHR+P WYV + + D + ++R+I + G +
Sbjct: 530 DWCVSRQLWWGHRIPVWYVHSSQADADAAEEGRSERYIVARNAAEAAQKAAAAW-GDGLV 588
Query: 557 LNQDPDVLDT 566
L Q+PDVLDT
Sbjct: 589 LVQEPDVLDT 598
>Os03g0111700 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)
(ValRS)
Length = 188
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/130 (86%), Positives = 120/130 (92%)
Query: 119 VMPPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRE 178
V+PPPNVTGALHIGHALTVAIEDA+IRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRE
Sbjct: 28 VLPPPNVTGALHIGHALTVAIEDAIIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRE 87
Query: 179 RNLTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGASLDWSREAFTMDEQRSNAVTEAF 238
+ LTRHDIG + V EVLKWK+ YGGTILNQL RLGASLDWSRE FTMD+ RS AVTEAF
Sbjct: 88 KKLTRHDIGREELVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEAF 147
Query: 239 VRLHKEGLIY 248
VRL+K+GLIY
Sbjct: 148 VRLYKQGLIY 157
>Os02g0778200 Aminoacyl-tRNA synthetase, class I family protein
Length = 1058
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 19/238 (7%)
Query: 98 WWESSGYFRADSASTKPPFVIVMPPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNALWV 157
W E+ R +T FV+ PP G LH+GHAL ++D + R++ + + ++
Sbjct: 98 WEENQVLKRVSERNTGATFVLHDGPPYANGDLHMGHALNKILKDIINRYKLLQNHKVSFI 157
Query: 158 PGVDHAGIATQVVVEKKLMRERNLTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGASL 217
PG D G+ ++ V K L +E T + + P + K+ + T +N R G
Sbjct: 158 PGWDCHGLPIELKVLKSLDKE---TLNALTPIKLRQKAAKFAKATVTTQMNSFKRFGVWA 214
Query: 218 DWSREAFTMDEQRSNAVTEAFVRLHKEGLIYRDNRLVNWDCTLLTSISEIEVD----HID 273
DW T+ + A E F ++ +G IYR + V+W + T+++E E++ HI
Sbjct: 215 DWDNPYLTLSPEYEAAQLEVFGQMVMKGYIYRGRKPVHWSPSSRTALAEAELEYSENHIS 274
Query: 274 LKEETMLKIPGYATPVQFGVLISFAYPLEEGLGEIVVA--TTRIETMLGDTAIAVHPE 329
KI + P G+ LEE L + +A TT T+ + A+AV+PE
Sbjct: 275 KSMYAAFKITNLSKP---GL-------LEEFLPNLCLAIWTTTPWTIPANAAVAVNPE 322
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,628,451
Number of extensions: 828042
Number of successful extensions: 1683
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1662
Number of HSP's successfully gapped: 8
Length of query: 572
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 466
Effective length of database: 11,501,117
Effective search space: 5359520522
Effective search space used: 5359520522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)