Os10g0506200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS).
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Os10g0506200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154 | 0.583 | 6.48 | 0.275 | 1.93 | 5.5 | 0.872 | 14 | -0.0558 | 22 | 1.448 | 4321 | 2.01 | 3 |
| 190.65 | 0.643 | 6.88 | 0.588 | 1.91 | 5.01 | 0.421 | -- | -0.281 | 21.1 | 1.183 | 4330 | 1.95 | 3.16 |
| 156.84 | 0.583 | 6.46 | 0.202 | 1.93 | 5.51 | -- | 14.1 | -0.0538 | 22 | 1.607 | 4321 | 2.01 | 3 |
| 167.38 | 0.603 | 6.79 | 1.54 | 2.07 | 3.47 | -- | -- | 0.0394 | 21.7 | 0.5996 | 4336 | 2.05 | 3.07 |
| 380.71 | 0.909 | 6.48 | 0.213 | -- | 5.52 | -- | 14.1 | -0.0423 | -- | 1.831 | 4321 | 1.97 | 3.01 |
| 261.43 | 0.758 | 6.72 | 2.33 | 1.94 | -- | 1 | -- | 0.31 | 22.3 | -- | -- | -- | -- |
| 265.49 | 0.763 | 6.72 | 2.29 | 1.94 | -- | -- | -- | 0.306 | 22.4 | -- | -- | -- | -- |
| 393.52 | 0.924 | 6.77 | 1.71 | -- | 3.81 | -- | -- | -0.0467 | -- | 0.6672 | 4332 | 1.86 | 3.22 |
| 187.31 | 0.637 | 6.87 | -- | 1.93 | 3.93 | -- | -- | -0.359 | 22 | 1.593 | 4324 | 1.98 | 3.12 |
| 495.01 | 1.04 | 6.67 | 2.32 | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
| 403.21 | 0.939 | 6.78 | -- | 1.95 | -- | -- | -- | 0.0519 | 22.5 | -- | -- | -- | -- |
| 414.69 | 0.948 | 6.87 | -- | -- | 4.11 | -- | -- | -0.359 | -- | 1.593 | 4324 | 1.98 | 3.12 |
| 636.68 | 1.18 | 6.73 | -- | -- | -- | -- | -- | 0.0558 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 148.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 2 | 148.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 3 | 148.13 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 5 | 148.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 11 | 152.00 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 12 | 153.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 22 | 154.22 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 24 | 154.32 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 25 | 154.44 | radiation | 40 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 26 | 154.50 | radiation | 40 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 31 | 155.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 33 | 155.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 34 | 155.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 48 | 156.21 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 52 | 156.52 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 54 | 156.94 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 55 | 156.96 | wind | 5 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 57 | 157.30 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 60 | 157.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 63 | 157.65 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 67 | 157.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 74 | 157.96 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 75 | 158.05 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 91 | 158.92 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 100 | 159.41 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 105 | 159.64 | temperature | 25 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 107 | 159.72 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 112 | 159.85 | temperature | 10 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 152 | 160.30 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 156 | 160.34 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 177 | 160.50 | temperature | 10 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 183 | 160.52 | wind | 3 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 272 | 161.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 286 | 161.22 | wind | 5 | 43200 | < th | dose dependent | rect. | 13 | 8 |
| 289 | 161.23 | temperature | 20 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 300 | 161.26 | temperature | 20 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 303 | 161.29 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 312 | 161.31 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 349 | 161.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 361 | 161.50 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 420 | 161.77 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 9 |
| 464 | 161.92 | temperature | 20 | 43200 | > th | dose independent | sin | 4 | NA |
| 496 | 162.04 | temperature | 20 | 43200 | < th | dose independent | sin | 5 | NA |
| 509 | 162.08 | temperature | 25 | 43200 | < th | dose dependent | sin | 10 | NA |
| 589 | 162.36 | wind | 1 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 657 | 162.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 4 |
| 691 | 162.59 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 716 | 162.67 | wind | 1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 748 | 162.75 | temperature | 10 | 43200 | > th | dose dependent | sin | 10 | NA |
| 781 | 162.83 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 836 | 162.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 917 | 163.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 918 | 163.14 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 16 |
| 943 | 163.20 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 982 | 163.29 | temperature | 20 | 43200 | < th | dose independent | rect. | 17 | 18 |