Os03g0111700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS).
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Os03g0111700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.11 | 0.373 | 9.21 | -1.7 | 0.234 | 0.476 | 0.862 | 0.0196 | 0.0139 | 5.88 | 21.9 | 766 | -- | -- |
| 63.11 | 0.37 | 9.21 | -1.71 | 0.234 | 0.475 | 0.854 | -- | 0.013 | 5.87 | 21.91 | 765 | -- | -- |
| 64.78 | 0.375 | 9.21 | -1.76 | 0.24 | 0.464 | -- | -0.184 | -0.000692 | 5.73 | 22 | 741 | -- | -- |
| 64.9 | 0.375 | 9.21 | -1.7 | 0.24 | 0.472 | -- | -- | 0.0102 | 5.79 | 21.93 | 755 | -- | -- |
| 67.45 | 0.383 | 9.22 | -1.72 | -- | 0.464 | -- | -0.0678 | 0.00507 | -- | 22.2 | 1038 | -- | -- |
| 72.66 | 0.4 | 9.18 | -1.54 | 0.199 | -- | 0.793 | -- | 0.163 | 5.15 | -- | -- | -- | -- |
| 74.1 | 0.403 | 9.18 | -1.54 | 0.208 | -- | -- | -- | 0.159 | 4.26 | -- | -- | -- | -- |
| 67.47 | 0.383 | 9.22 | -1.73 | -- | 0.495 | -- | -- | 0.00499 | -- | 22 | 1138 | -- | -- |
| 136.28 | 0.544 | 9.17 | -- | 0.244 | 0.194 | -- | -- | 0.306 | 4.65 | 22.3 | 720 | -- | -- |
| 76.44 | 0.409 | 9.18 | -1.53 | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
| 136.81 | 0.547 | 9.14 | -- | 0.179 | -- | -- | -- | 0.331 | 4.42 | -- | -- | -- | -- |
| 98.1 | 0.461 | 9.07 | -- | -- | -0.946 | -- | -- | 0.645 | -- | 21.05 | 47520 | -- | -- |
| 138.52 | 0.549 | 9.14 | -- | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.28 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 2 | 64.43 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 3 | 64.44 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 5 | 64.47 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 17 | 64.61 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 47 | 64.80 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 56 | 64.86 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 57 | 64.86 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 63 | 64.88 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 65 | 64.90 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 73 | 64.93 | wind | 3.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 93 | 65.03 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 97 | 65.04 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 111 | 65.07 | wind | 3.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 116 | 65.09 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 119 | 65.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 122 | 65.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 123 | 65.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 135 | 65.20 | temperature | 25.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 136 | 65.20 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 6 |
| 154 | 65.27 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 162 | 65.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 165 | 65.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 166 | 65.30 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 189 | 65.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 190 | 65.37 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 192 | 65.37 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 256 | 65.56 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 269 | 65.58 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 293 | 65.61 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 10 | 21 |
| 302 | 65.63 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 316 | 65.66 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 322 | 65.66 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 10 |
| 333 | 65.67 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 342 | 65.68 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 357 | 65.70 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 372 | 65.72 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 384 | 65.73 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 409 | 65.75 | temperature | 15.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 426 | 65.76 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 464 | 65.79 | temperature | 25.0 | 720 | < th | dose dependent | sin | 2 | NA |
| 479 | 65.80 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 559 | 65.84 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 648 | 65.90 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 685 | 65.93 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 686 | 65.93 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 799 | 65.99 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 896 | 66.04 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 897 | 66.04 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 907 | 66.04 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 951 | 66.07 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 962 | 66.07 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 994 | 66.10 | temperature | 25.0 | 10 | < th | dose dependent | sin | 2 | NA |