BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0111700 Os03g0111700|AK066973
(188 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14610.1 | chr1:5008502-5014486 REVERSE LENGTH=1109 241 2e-64
AT5G16715.1 | chr5:5485353-5493229 FORWARD LENGTH=975 168 2e-42
AT4G04350.1 | chr4:2128129-2133030 FORWARD LENGTH=974 61 3e-10
AT5G49030.1 | chr5:19875091-19882291 REVERSE LENGTH=1094 58 3e-09
AT4G10320.1 | chr4:6397526-6404509 REVERSE LENGTH=1191 51 4e-07
>AT1G14610.1 | chr1:5008502-5014486 REVERSE LENGTH=1109
Length = 1108
Score = 241 bits (614), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 112/130 (86%), Positives = 122/130 (93%)
Query: 28 VLPPPNVTGALHIGHALTVAIEDAIIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRE 87
VLPPPNVTGALHIGHALT AIED IIRW+RMSGYNALWVPGVDHAGIATQVVVEKK+MR+
Sbjct: 173 VLPPPNVTGALHIGHALTSAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKIMRD 232
Query: 88 KKLTRHDIGREELVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEAF 147
+ +TRHD+GREE V EV KWK++YGGTIL QLRRLGASLDWSRECFTMD+ RSKAVTEAF
Sbjct: 233 RGMTRHDVGREEFVKEVWKWKNQYGGTILTQLRRLGASLDWSRECFTMDEQRSKAVTEAF 292
Query: 148 VRLYKQGLIY 157
VRLYK+GLIY
Sbjct: 293 VRLYKEGLIY 302
>AT5G16715.1 | chr5:5485353-5493229 FORWARD LENGTH=975
Length = 974
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/129 (59%), Positives = 102/129 (79%), Gaps = 1/129 (0%)
Query: 29 LPPPNVTGALHIGHALTVAIEDAIIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMREK 88
+PPPNVTG+LH+GHA+ V +ED ++R+ RM+G LW+PG DHAGIATQ+VVEK L E
Sbjct: 106 MPPPNVTGSLHMGHAMFVTLEDIMVRYNRMNGRPTLWLPGTDHAGIATQLVVEKMLASEG 165
Query: 89 KLTRHDIGREELVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEAFV 148
+ R D+GR+E V +WK++YGGTI NQ++RLGAS DWSRE FT+D+ S+AV EAFV
Sbjct: 166 -IKRVDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFV 224
Query: 149 RLYKQGLIY 157
+L+ +GLIY
Sbjct: 225 KLHDKGLIY 233
>AT4G04350.1 | chr4:2128129-2133030 FORWARD LENGTH=974
Length = 973
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 71/167 (42%), Gaps = 24/167 (14%)
Query: 9 RIFWGRSCGSYFEVCTRYYVL---PPPNVTGALHIGHALTVAIEDAIIRWRRMSGYNALW 65
RIF R+ ++YVL P P+ G LH+GH L D + R RRM GYN L
Sbjct: 102 RIF--RTPDDVDTSKPKFYVLDMFPYPSGAG-LHVGHPLGYTATDILARLRRMQGYNVLH 158
Query: 66 VPGVDHAGIATQVVVEKKLMREKKLTRHDIGREELVSEVLKWKDEYGGTILNQLRRLGAS 125
G D G+ + + K T +I R L QL+ LG S
Sbjct: 159 PMGWDAFGLPAEQYAIETGTHPKTTTLKNIDRFRL-----------------QLKSLGFS 201
Query: 126 LDWSRECFTMDKPRSKAVTEAFVRLYKQGLIY-SFFPLLWMICFYTL 171
DW RE T + K F++LYK+GL Y + P+ W T+
Sbjct: 202 YDWDRELSTTEPDYYKWTQWIFLQLYKKGLAYQAEVPVNWCPALGTV 248
>AT5G49030.1 | chr5:19875091-19882291 REVERSE LENGTH=1094
Length = 1093
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 31 PPNVTGALHIGHALTVAIEDAIIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMREKKL 90
PP G LH+GHAL ++D I R++ + Y +VPG D G+ ++ V + L +E
Sbjct: 154 PPYANGDLHMGHALNKILKDIINRYKLLQNYKVQYVPGWDCHGLPIELKVLQSLDQE--- 210
Query: 91 TRHDIGREELVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEAFVRL 150
R ++ +L ++ K+ T + +R G DW+ T+D A E F ++
Sbjct: 211 VRKELTPLKLRAKAAKFAKATVKTQMESFKRFGVWADWNNPYLTLDPEYEAAQIEVFGQM 270
Query: 151 YKQGLIY 157
+G IY
Sbjct: 271 ALKGYIY 277
>AT4G10320.1 | chr4:6397526-6404509 REVERSE LENGTH=1191
Length = 1190
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 31 PPNVTGALHIGHALTVAIEDAIIRWRRMSGYNALWVPGVDHAGIATQVVVEKKL--MREK 88
PP TG H GH L I+D + R++ M+G++ G D G+ + +++KL R
Sbjct: 48 PPFATGLPHYGHILAGTIKDIVTRYQTMTGHHVTRRFGWDCHGLPVENEIDRKLNIKRRD 107
Query: 89 KLTRHDIGR--EELVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEA 146
++ + I + EE S V ++ E+ I R G +D+ + TMD P ++V
Sbjct: 108 EVIKMGIDKYNEECRSIVTRYVAEWEKVIT----RCGRWIDFKNDYKTMDLPFMESVWWV 163
Query: 147 FVRLYKQGLIYSFFPLL 163
F +L+++ L+Y F ++
Sbjct: 164 FSQLWEKNLVYRGFKVM 180
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,431,154
Number of extensions: 170483
Number of successful extensions: 453
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 5
Length of query: 188
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 95
Effective length of database: 8,556,881
Effective search space: 812903695
Effective search space used: 812903695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)