BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0111700 Os03g0111700|AK066973
(188 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0111700 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) ... 390 e-109
Os03g0694900 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) ... 263 5e-71
Os03g0335600 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) ... 235 1e-62
Os10g0506200 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) ... 230 4e-61
AK110466 202 1e-52
AK110360 182 1e-46
AK119837 149 1e-36
>Os03g0111700 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)
(ValRS)
Length = 188
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MVCLVGIVRIFWGRSCGSYFEVCTRYYVLPPPNVTGALHIGHALTVAIEDAIIRWRRMSG 60
MVCLVGIVRIFWGRSCGSYFEVCTRYYVLPPPNVTGALHIGHALTVAIEDAIIRWRRMSG
Sbjct: 1 MVCLVGIVRIFWGRSCGSYFEVCTRYYVLPPPNVTGALHIGHALTVAIEDAIIRWRRMSG 60
Query: 61 YNALWVPGVDHAGIATQVVVEKKLMREKKLTRHDIGREELVSEVLKWKDEYGGTILNQLR 120
YNALWVPGVDHAGIATQVVVEKKLMREKKLTRHDIGREELVSEVLKWKDEYGGTILNQLR
Sbjct: 61 YNALWVPGVDHAGIATQVVVEKKLMREKKLTRHDIGREELVSEVLKWKDEYGGTILNQLR 120
Query: 121 RLGASLDWSRECFTMDKPRSKAVTEAFVRLYKQGLIYSFFPLLWMICFYTLEGLSPRELG 180
RLGASLDWSRECFTMDKPRSKAVTEAFVRLYKQGLIYSFFPLLWMICFYTLEGLSPRELG
Sbjct: 121 RLGASLDWSRECFTMDKPRSKAVTEAFVRLYKQGLIYSFFPLLWMICFYTLEGLSPRELG 180
Query: 181 LHSSNSNF 188
LHSSNSNF
Sbjct: 181 LHSSNSNF 188
>Os03g0694900 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)
(ValRS)
Length = 1054
Score = 263 bits (672), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 126/140 (90%), Positives = 131/140 (93%)
Query: 28 VLPPPNVTGALHIGHALTVAIEDAIIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRE 87
VLPPPNVTGALHIGHALTVAIED++IRWRRMSGYN LWVPGVDHAGIATQVVVEKKLMRE
Sbjct: 129 VLPPPNVTGALHIGHALTVAIEDSMIRWRRMSGYNTLWVPGVDHAGIATQVVVEKKLMRE 188
Query: 88 KKLTRHDIGREELVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEAF 147
+ LTRHDIGREE VSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEAF
Sbjct: 189 RNLTRHDIGREEFVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEAF 248
Query: 148 VRLYKQGLIYSFFPLLWMIC 167
VRLYKQGLIY + L+ C
Sbjct: 249 VRLYKQGLIYRDYRLVNWDC 268
>Os03g0335600 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)
(ValRS)
Length = 572
Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 112/130 (86%), Positives = 120/130 (92%)
Query: 28 VLPPPNVTGALHIGHALTVAIEDAIIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRE 87
V+PPPNVTGALHIGHALTVAIEDA+IRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRE
Sbjct: 119 VMPPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRE 178
Query: 88 KKLTRHDIGREELVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEAF 147
+ LTRHDIG + V EVLKWK+ YGGTILNQL RLGASLDWSRE FTMD+ RS AVTEAF
Sbjct: 179 RNLTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGASLDWSREAFTMDEQRSNAVTEAF 238
Query: 148 VRLYKQGLIY 157
VRL+K+GLIY
Sbjct: 239 VRLHKEGLIY 248
>Os10g0506200 Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)
(ValRS)
Length = 1042
Score = 230 bits (587), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 123/130 (94%)
Query: 28 VLPPPNVTGALHIGHALTVAIEDAIIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRE 87
+LPPPNVTG LHIGHA+TVAIEDA+IRWRRMSGYNALWVPG+DHAGIATQVVVEK+LMR+
Sbjct: 121 ILPPPNVTGVLHIGHAITVAIEDAMIRWRRMSGYNALWVPGMDHAGIATQVVVEKRLMRD 180
Query: 88 KKLTRHDIGREELVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEAF 147
+ L+RHD+GR++ + EVL+WKD++GGTIL QLR LGASLDWSRECFTMD+ RSKAVTEAF
Sbjct: 181 RNLSRHDLGRDKFLLEVLQWKDQHGGTILKQLRTLGASLDWSRECFTMDEKRSKAVTEAF 240
Query: 148 VRLYKQGLIY 157
+RL+K+GLIY
Sbjct: 241 IRLHKEGLIY 250
>AK110466
Length = 983
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 92/130 (70%), Positives = 110/130 (84%)
Query: 28 VLPPPNVTGALHIGHALTVAIEDAIIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRE 87
V+PPPNVTGALHIGHALT A++D I+RWRRMSGYN LWVPG DHAGIATQ VVEKKL +E
Sbjct: 45 VIPPPNVTGALHIGHALTNAVQDTIVRWRRMSGYNVLWVPGTDHAGIATQSVVEKKLQKE 104
Query: 88 KKLTRHDIGREELVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEAF 147
+TRHD+GRE+ +SEV KW DEYGG I +QLRR+G+S+DW R FTMD+ RS+AV EAF
Sbjct: 105 MGITRHDLGREKFLSEVFKWVDEYGGRICSQLRRMGSSVDWDRCVFTMDETRSRAVLEAF 164
Query: 148 VRLYKQGLIY 157
VR+++ G IY
Sbjct: 165 VRMFESGCIY 174
>AK110360
Length = 1055
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 13 GRSCGSYFEVCTRYYVLPPPNVTGALHIGHALTVAIEDAIIRWRRMSG--YNALWVPGVD 70
G YF + V+PPPNVTG+LHIGHALTV++EDA++RW++M + W+PG+D
Sbjct: 70 GTPSDKYFSM-----VVPPPNVTGSLHIGHALTVSMEDALVRWQKMRHVMQDVTWIPGLD 124
Query: 71 HAGIATQVVVEKKLMREKKLTRHDIGREELVSEVLKWKDEYGGTILNQLRRLGASLDWSR 130
HAGIATQVVVEK+L + + ++RHD+GRE + EV +WK++YGG I+ QL+R GA+LDWSR
Sbjct: 125 HAGIATQVVVEKQLKKSQNVSRHDLGRERFIEEVWRWKEQYGGRIVEQLKRTGAALDWSR 184
Query: 131 ECFTMDKPRSKAVTEAFVRLYKQGLIY 157
E FT+ S+AVTEAFVR++ +GLIY
Sbjct: 185 EVFTLSPELSRAVTEAFVRMHDEGLIY 211
>AK119837
Length = 1072
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 91/125 (72%), Gaps = 1/125 (0%)
Query: 33 NVTGALHIGHALTVAIEDAIIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMREKKLTR 92
NVTG LH+GHA+ V ++D + R+ RM+G LW+PG DHAGIATQ VVEK+L E +R
Sbjct: 173 NVTGKLHMGHAMFVTLQDVMARYARMAGKKTLWLPGTDHAGIATQNVVEKQLEAEGS-SR 231
Query: 93 HDIGREELVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPRSKAVTEAFVRLYK 152
+GR+ V +W+ EYGG I NQLRRLGAS DWSRE FT+D+ S+AV EAFVRL
Sbjct: 232 ASLGRDAFEERVWQWRAEYGGFITNQLRRLGASCDWSRERFTLDQGLSEAVAEAFVRLAD 291
Query: 153 QGLIY 157
QGL+Y
Sbjct: 292 QGLVY 296
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.140 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,975,757
Number of extensions: 263391
Number of successful extensions: 706
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 7
Length of query: 188
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 93
Effective length of database: 12,075,471
Effective search space: 1123018803
Effective search space used: 1123018803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)