Os02g0778200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aminoacyl-tRNA synthetase, class I family protein.
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Os02g0778200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aminoacyl-tRNA synthetase, class I family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.05 | 0.329 | 13.8 | -0.802 | 1.23 | 0.748 | 0.561 | 1.2 | -0.304 | 22.1 | 10.23 | 114 | -- | -- |
| 50.73 | 0.332 | 13.8 | -0.816 | 1.19 | 0.618 | 0.161 | -- | -0.29 | 22.1 | 8.614 | 122 | -- | -- |
| 49.98 | 0.329 | 13.8 | -0.799 | 1.19 | 0.74 | -- | 1.05 | -0.306 | 22 | 12.32 | 121 | -- | -- |
| 50.51 | 0.331 | 13.8 | -0.805 | 1.23 | 0.678 | -- | -- | -0.302 | 22.1 | 6.752 | 122 | -- | -- |
| 80.51 | 0.418 | 13.8 | -0.743 | -- | 1.15 | -- | 0.411 | -0.436 | -- | 0.06517 | 954 | -- | -- |
| 57.13 | 0.354 | 13.8 | -0.791 | 1.02 | -- | 0.143 | -- | -0.265 | 21.1 | -- | -- | -- | -- |
| 57.2 | 0.354 | 13.8 | -0.796 | 1.02 | -- | -- | -- | -0.266 | 21.2 | -- | -- | -- | -- |
| 78.5 | 0.413 | 13.8 | -0.875 | -- | 1.04 | -- | -- | -0.382 | -- | -0.2639 | 940 | -- | -- |
| 67.46 | 0.383 | 13.8 | -- | 1.23 | 0.672 | -- | -- | -0.213 | 22 | 6.141 | 114 | -- | -- |
| 116.98 | 0.505 | 13.8 | -0.793 | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
| 73.9 | 0.402 | 13.8 | -- | 1.02 | -- | -- | -- | -0.177 | 21.1 | -- | -- | -- | -- |
| 99.02 | 0.463 | 13.8 | -- | -- | 0.986 | -- | -- | -0.294 | -- | -0.2002 | 924 | -- | -- |
| 133.57 | 0.539 | 13.7 | -- | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.75 | temperature | 25.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 7 | 41.62 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 10 | 41.82 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 14 | 42.02 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 17 | 42.02 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 18 | 42.06 | radiation | 10.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 22 | 42.16 | radiation | 10.0 | 10 | < th | dose independent | rect. | 6 | 8 |
| 29 | 42.39 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 32 | 42.45 | radiation | 20.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 33 | 42.46 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 34 | 42.47 | humidity | 70.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 35 | 42.55 | humidity | 90.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 36 | 42.56 | radiation | 1.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 37 | 42.57 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 40 | 42.65 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 41 | 42.65 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 42 | 42.69 | wind | 5.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 48 | 42.72 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 50 | 42.72 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 51 | 42.72 | humidity | 50.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 53 | 42.72 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 54 | 42.72 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 56 | 42.72 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 57 | 42.73 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 1 |
| 58 | 42.73 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 59 | 42.74 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 68 | 42.90 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 74 | 43.04 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 7 |
| 79 | 43.14 | wind | 9.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 91 | 43.20 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 92 | 43.21 | wind | 3.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 95 | 43.23 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 98 | 43.25 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 101 | 43.29 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 105 | 43.34 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 135 | 43.55 | wind | 7.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 146 | 43.73 | humidity | 50.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 152 | 43.81 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 154 | 43.84 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 176 | 43.92 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 180 | 43.94 | radiation | 10.0 | 10 | < th | dose independent | rect. | 6 | 18 |
| 183 | 43.98 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 184 | 43.98 | radiation | 1.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 200 | 44.02 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 209 | 44.02 | radiation | 1.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 214 | 44.03 | wind | 9.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 216 | 44.03 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 217 | 44.04 | wind | 9.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 225 | 44.04 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 240 | 44.05 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 248 | 44.05 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 254 | 44.05 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 256 | 44.05 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 263 | 44.05 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 274 | 44.07 | humidity | 70.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 279 | 44.08 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 280 | 44.09 | radiation | 1.0 | 90 | < th | dose independent | sin | 10 | NA |
| 290 | 44.12 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 323 | 44.22 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 21 |
| 326 | 44.23 | radiation | 1.0 | 90 | > th | dose independent | sin | 10 | NA |
| 339 | 44.30 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 3 |
| 340 | 44.30 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 343 | 44.31 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 345 | 44.31 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 346 | 44.31 | humidity | 50.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 349 | 44.31 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 350 | 44.31 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 351 | 44.31 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 21 |
| 354 | 44.31 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 361 | 44.33 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 368 | 44.36 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 377 | 44.39 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 381 | 44.41 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 382 | 44.42 | wind | 1.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 384 | 44.43 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 16 |
| 385 | 44.44 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 7 | 23 |
| 386 | 44.44 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 387 | 44.44 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 388 | 44.44 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 390 | 44.45 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 428 | 44.57 | wind | 1.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 440 | 44.62 | radiation | 1.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 444 | 44.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 450 | 44.66 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 454 | 44.68 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 461 | 44.72 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 464 | 44.72 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 465 | 44.72 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 466 | 44.72 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 528 | 45.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 3 |
| 530 | 45.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 545 | 45.06 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 553 | 45.08 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 556 | 45.08 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 558 | 45.08 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 559 | 45.08 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 3 |
| 562 | 45.08 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 581 | 45.13 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 21 |
| 637 | 45.27 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 670 | 45.33 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 696 | 45.43 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 716 | 45.50 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 21 |
| 717 | 45.50 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 765 | 45.71 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 13 |
| 779 | 45.76 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 21 |
| 797 | 45.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 800 | 45.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 852 | 45.94 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 866 | 45.96 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 879 | 46.04 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 916 | 46.15 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 7 | 23 |