BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0322800 Os03g0322800|AK101817
(317 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0322800 Engulfment and cell motility, ELM domain conta... 619 e-177
Os12g0126200 Engulfment and cell motility, ELM domain conta... 320 7e-88
Os11g0483900 Engulfment and cell motility, ELM domain conta... 249 2e-66
Os02g0652300 Engulfment and cell motility, ELM domain conta... 249 3e-66
Os04g0545100 Engulfment and cell motility, ELM domain conta... 248 5e-66
Os04g0101700 Engulfment and cell motility, ELM domain conta... 246 1e-65
Os11g0129600 Engulfment and cell motility, ELM domain conta... 76 3e-14
>Os03g0322800 Engulfment and cell motility, ELM domain containing protein
Length = 317
Score = 619 bits (1595), Expect = e-177, Method: Compositional matrix adjust.
Identities = 304/317 (95%), Positives = 304/317 (95%)
Query: 1 MSMTNLRRRLHHGDVDGRKNEHVDISSVDSLNEPLLGKSSSDTGGSEVYDPRRQDLWDDD 60
MSMTNLRRRLHHGDVDGRKNEHVDISSVDSLNEPLLGKSSSDTGGSEVYDPRRQDLWDDD
Sbjct: 1 MSMTNLRRRLHHGDVDGRKNEHVDISSVDSLNEPLLGKSSSDTGGSEVYDPRRQDLWDDD 60
Query: 61 RKKEQLHWSFLFSNLIAQWAQWLANIIVGSGSLFGRLFPFSLDNQNSSPVYLSPLQEDRL 120
RKKEQLHWSFLFSNLIAQWAQWLANIIVGSGSLFGRLFPFSLDNQNSSPVYLSPLQEDRL
Sbjct: 61 RKKEQLHWSFLFSNLIAQWAQWLANIIVGSGSLFGRLFPFSLDNQNSSPVYLSPLQEDRL 120
Query: 121 NTLRSRLQIPFDGSRVEHQDALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGG 180
NTLRSRLQIPFDGSRVEHQDALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGG
Sbjct: 121 NTLRSRLQIPFDGSRVEHQDALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGG 180
Query: 181 GFISLENLIFFARNYPGSFQALLNKVQGQRADWEYPFAVAGINISFMLIQMLDLQSSVPS 240
GFISLENLIFFARNYPGSFQALLNKVQGQRADWEYPFAVAGINISFMLIQMLDLQSSVPS
Sbjct: 181 GFISLENLIFFARNYPGSFQALLNKVQGQRADWEYPFAVAGINISFMLIQMLDLQSSVPS 240
Query: 241 SKSGVRFVELLGRDENAFDHLYCIAFRLLDAQWLVKRASYMEFNEVLKSTRTQXXXXXXX 300
SKSGVRFVELLGRDENAFDHLYCIAFRLLDAQWLVKRASYMEFNEVLKSTRTQ
Sbjct: 241 SKSGVRFVELLGRDENAFDHLYCIAFRLLDAQWLVKRASYMEFNEVLKSTRTQLERELVL 300
Query: 301 XXXXXXKDLPSYTMLDK 317
KDLPSYTMLDK
Sbjct: 301 EDVLEVKDLPSYTMLDK 317
>Os12g0126200 Engulfment and cell motility, ELM domain containing protein
Length = 320
Score = 320 bits (821), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 161/323 (49%), Positives = 223/323 (69%), Gaps = 9/323 (2%)
Query: 1 MSMTNLRRRLHHGDVDGRKNEHVDISSVDSLNEPLLGKSSSDTGGSEVYDPRRQ-DLWDD 59
M+ ++R+ + D+D R + ++ DS+ EPLLG + ++ SE ++P Q +LWD
Sbjct: 1 MASKAIKRKPYTADID-RSEKQMETIIPDSVREPLLGNRTHESK-SERHEPNMQPNLWDG 58
Query: 60 DRKKEQLHWSFLFSNLIAQWAQWLANIIVGSGSLFGRLFPFSLDNQNSSP-----VYLSP 114
+ +E+L W + S IAQ + + N + G L + F S + S + LSP
Sbjct: 59 -KGQERLGWMHIISTFIAQSVRKIGNALSQFGPLLAKFFSRSCASHGSHDEQAVLLDLSP 117
Query: 115 LQEDRLNTLRSRLQIPFDGSRVEHQDALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPS 174
LQE+RL LR RL +PFD S V+HQDAL++LWRLAYP+R +PPLKS+LWKEMGWQ +DP+
Sbjct: 118 LQEERLRFLRQRLNVPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPA 177
Query: 175 TDFRGGGFISLENLIFFARNYPGSFQALLNKVQGQRADWEYPFAVAGINISFMLIQMLDL 234
TDFR GGF+SLENLI+FARNYP SF +LL+K G+R++WEYPFAVAG+NIS+ML+QMLDL
Sbjct: 178 TDFRAGGFMSLENLIYFARNYPDSFHSLLHKADGKRSEWEYPFAVAGVNISYMLVQMLDL 237
Query: 235 QSSVPSSKSGVRFVELLGRDENAFDHLYCIAFRLLDAQWLVKRASYMEFNEVLKSTRTQX 294
QS +K +FV+LL DE AFD+L+C+AF++LDAQWL ++ASYMEFNEVLKS R Q
Sbjct: 238 QSGKMGTKVSSQFVQLLREDEMAFDNLFCMAFQMLDAQWLTRQASYMEFNEVLKSMRIQL 297
Query: 295 XXXXXXXXXXXXKDLPSYTMLDK 317
+++PS+ +L +
Sbjct: 298 EQELTIGSISCVQEMPSFRLLKR 320
>Os11g0483900 Engulfment and cell motility, ELM domain containing protein
Length = 250
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 116/204 (56%), Positives = 151/204 (74%)
Query: 112 LSPLQEDRLNTLRSRLQIPFDGSRVEHQDALRQLWRLAYPNRDIPPLKSELWKEMGWQGT 171
L+P+QE+RL LR R+++ FD SR +HQ+AL+ LW YP++++ L SE WK+MGWQG
Sbjct: 46 LTPVQEERLQRLRHRMKVYFDPSRRDHQEALKALWHATYPDQELQGLISEQWKDMGWQGR 105
Query: 172 DPSTDFRGGGFISLENLIFFARNYPGSFQALLNKVQGQRADWEYPFAVAGINISFMLIQM 231
DPSTDFRG GFISLENL+FFA+ + SFQ LL K G RA WEYPFAVAG+NI+FM++QM
Sbjct: 106 DPSTDFRGAGFISLENLLFFAKTFSASFQRLLKKQCGNRATWEYPFAVAGVNITFMIMQM 165
Query: 232 LDLQSSVPSSKSGVRFVELLGRDENAFDHLYCIAFRLLDAQWLVKRASYMEFNEVLKSTR 291
LDLQS+ P + F+++L DE AFD LYC+AF ++D QWL K ASYM+FNE+LKSTR
Sbjct: 166 LDLQSTKPRTFVRAVFIQMLSEDEWAFDLLYCVAFVVMDKQWLDKNASYMDFNEILKSTR 225
Query: 292 TQXXXXXXXXXXXXXKDLPSYTML 315
TQ +D+PSY++L
Sbjct: 226 TQLERELLLDDVMRIEDMPSYSLL 249
>Os02g0652300 Engulfment and cell motility, ELM domain containing protein
Length = 269
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 160/238 (67%), Gaps = 4/238 (1%)
Query: 84 ANIIVGSGSLFGRLFPFSLDNQNSSPVYLS----PLQEDRLNTLRSRLQIPFDGSRVEHQ 139
A ++ GS + G+ + S LS P+QE+ L L++RL++ +D S +HQ
Sbjct: 32 AEVVTGSTAWIGKGLSCVCAQRRDSDARLSFDLTPVQEECLQRLQNRLEVQYDSSNSDHQ 91
Query: 140 DALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGGGFISLENLIFFARNYPGSF 199
+AL+ LWR ++P ++ L SE WKEMGWQG DPSTDFRGGGFISLENL++F++N+P SF
Sbjct: 92 EALKDLWRASFPGAELRGLISEQWKEMGWQGKDPSTDFRGGGFISLENLVYFSKNFPKSF 151
Query: 200 QALLNKVQGQRADWEYPFAVAGINISFMLIQMLDLQSSVPSSKSGVRFVELLGRDENAFD 259
Q LL K G RA WEYPFAVAG+NI+FMLIQMLDLQS P S G F++LL ++ AFD
Sbjct: 152 QELLRKQNGDRAIWEYPFAVAGVNITFMLIQMLDLQSVKPRSFIGAVFLKLLSENDQAFD 211
Query: 260 HLYCIAFRLLDAQWLVKRASYMEFNEVLKSTRTQXXXXXXXXXXXXXKDLPSYTMLDK 317
LYCI F+L+D QWL A+YM+FN V+KSTR Q +D+PSY +L +
Sbjct: 212 ILYCITFKLMDQQWLDMHATYMDFNTVMKSTRRQLERELLLEDIQRIEDMPSYKLLAR 269
>Os04g0545100 Engulfment and cell motility, ELM domain containing protein
Length = 266
Score = 248 bits (632), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 123/238 (51%), Positives = 160/238 (67%), Gaps = 4/238 (1%)
Query: 84 ANIIVGSGSLFGRLFPFSL----DNQNSSPVYLSPLQEDRLNTLRSRLQIPFDGSRVEHQ 139
A ++ GS + GR F D+ LSP QE L L++R+++P+DGS EHQ
Sbjct: 29 AEVVAGSTAWIGRGFSCVCAQRRDSDQRISFDLSPAQECCLQRLQNRIEVPYDGSNGEHQ 88
Query: 140 DALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGGGFISLENLIFFARNYPGSF 199
+AL+ LW +++P ++ L S+ WKEMGWQG DPSTDFRGGGFISLENL++FA+NY SF
Sbjct: 89 EALKTLWHVSFPGTELLGLVSDQWKEMGWQGKDPSTDFRGGGFISLENLLYFAKNYTKSF 148
Query: 200 QALLNKVQGQRADWEYPFAVAGINISFMLIQMLDLQSSVPSSKSGVRFVELLGRDENAFD 259
Q LL K G RA WEYPFAVAG+NI+FMLIQMLDLQ++ P S G F+ LL ++ AFD
Sbjct: 149 QELLCKQNGDRALWEYPFAVAGVNITFMLIQMLDLQAAKPRSLIGSVFLNLLLENDRAFD 208
Query: 260 HLYCIAFRLLDAQWLVKRASYMEFNEVLKSTRTQXXXXXXXXXXXXXKDLPSYTMLDK 317
LYCI F+L+D +WL A+YM+FN V+KSTR Q +D+PSY LD+
Sbjct: 209 ILYCITFKLMDHKWLEMHANYMDFNAVIKSTRRQLERELLLEDIQRIEDMPSYRFLDR 266
>Os04g0101700 Engulfment and cell motility, ELM domain containing protein
Length = 234
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 161/234 (68%), Gaps = 3/234 (1%)
Query: 87 IVGSGSLFGRLFPFSLDNQ--NSSPVY-LSPLQEDRLNTLRSRLQIPFDGSRVEHQDALR 143
+VG+ FG LF S + N+ + LSP+QE RL L+ RL IP+D +R +HQ+ALR
Sbjct: 1 MVGNRIWFGGLFTSSGRRRQINAEKTFELSPVQEQRLQKLKERLNIPYDQTRRDHQEALR 60
Query: 144 QLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGGGFISLENLIFFARNYPGSFQALL 203
LW ++P+ ++ L SE WK+MGWQG +PSTDFRG GF+ LENL+FFA YP S+Q LL
Sbjct: 61 ALWSASFPDAELSSLISEQWKDMGWQGPNPSTDFRGCGFVGLENLLFFATTYPASYQRLL 120
Query: 204 NKVQGQRADWEYPFAVAGINISFMLIQMLDLQSSVPSSKSGVRFVELLGRDENAFDHLYC 263
K QG RA WEYPFAVAG+N+S+MLIQ+L+L + P S G+ F+++L E AFD LYC
Sbjct: 121 LKKQGMRATWEYPFAVAGVNVSYMLIQLLELNAERPKSLPGINFIKVLSEHEEAFDVLYC 180
Query: 264 IAFRLLDAQWLVKRASYMEFNEVLKSTRTQXXXXXXXXXXXXXKDLPSYTMLDK 317
IAF ++DAQWL RASYM+F +VL++T+ Q +D+P+Y +L K
Sbjct: 181 IAFEMMDAQWLAMRASYMQFKDVLEATKQQLERELSLEDVNGIRDIPAYNLLYK 234
>Os11g0129600 Engulfment and cell motility, ELM domain containing protein
Length = 54
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%), Gaps = 3/47 (6%)
Query: 139 QDALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPSTDFRGGGFISL 185
QDAL++LWRLAYP+R +PPLKS+LWKEMGWQ +DP+TDFR F+SL
Sbjct: 1 QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR---FVSL 44
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,255,259
Number of extensions: 483963
Number of successful extensions: 1072
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1070
Number of HSP's successfully gapped: 7
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)