BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0312600 Os03g0312600|AK073391
(396 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0312600 Similar to XPA-binding protein 1 (HUSSY-23) 628 e-180
Os03g0337700 Protein of unknown function, ATP binding famil... 88 1e-17
Os02g0555000 Protein of unknown function, ATP binding famil... 86 4e-17
Os03g0714400 Protein of unknown function, ATP binding famil... 69 7e-12
>Os03g0312600 Similar to XPA-binding protein 1 (HUSSY-23)
Length = 396
Score = 628 bits (1620), Expect = e-180, Method: Compositional matrix adjust.
Identities = 315/396 (79%), Positives = 315/396 (79%)
Query: 1 MDVDSDPAAAGKPTQMDLEDQTDAKGKGKSEELADSIGSLSIGPERTNFKKKPVIIIVIG 60
MDVDSDPAAAGKPTQMDLEDQTDAKGKGKSEELADSIGSLSIGPERTNFKKKPVIIIVIG
Sbjct: 1 MDVDSDPAAAGKPTQMDLEDQTDAKGKGKSEELADSIGSLSIGPERTNFKKKPVIIIVIG 60
Query: 61 MAGTGKTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVMKEYGLG 120
MAGTGKTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVMKEYGLG
Sbjct: 61 MAGTGKTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVMKEYGLG 120
Query: 121 PNGGILTSLNLFSTKFDEVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFAST 180
PNGGILTSLNLFSTKFDEVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFAST
Sbjct: 121 PNGGILTSLNLFSTKFDEVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFAST 180
Query: 181 FPTVVAYVVDTPRSTSPVTFMSNMLYACSILYKTRLPMILTFNKVDVAKHEFALEWMEDF 240
FPTVVAYVVDTPRSTSPVTFMSNMLYACSILYKTRLPMILTFNKVDVAKHEFALEWMEDF
Sbjct: 181 FPTVVAYVVDTPRSTSPVTFMSNMLYACSILYKTRLPMILTFNKVDVAKHEFALEWMEDF 240
Query: 241 EAFQXXXXXXXXXXXXXXXXXXXVLDEFYKNLRXXXXXXXXXXXXNSFFEAIEASAKEYM 300
EAFQ VLDEFYKNLR NSFFEAIEASAKEYM
Sbjct: 241 EAFQTALDSDSSYSSTFTRSLSLVLDEFYKNLRSVGVSAVSGAGVNSFFEAIEASAKEYM 300
Query: 301 ENYRADLDXXXXXXXXXXXXXXXXNMERLQRDMENSKGQTVVLSTGLKDKNRATXXXXXX 360
ENYRADLD NMERLQRDMENSKGQTVVLSTGLKDKNRAT
Sbjct: 301 ENYRADLDKRIAEKERLEAERRKENMERLQRDMENSKGQTVVLSTGLKDKNRATDMMDDA 360
Query: 361 XXXXXXXXXXXFRISXXXXXXXXXXXXXXXXXHFGL 396
FRIS HFGL
Sbjct: 361 DEEEEEAALEDFRISEDDEDEDEDEGEDEEVEHFGL 396
>Os03g0337700 Protein of unknown function, ATP binding family protein
Length = 265
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 5/182 (2%)
Query: 57 IVIGMAGTGKTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVMKE 116
+VIG AG+GK+T+ L H + +++NLDPA + + DIR+ + +VM+E
Sbjct: 6 LVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLDDVMEE 65
Query: 117 YGLGPNGGILTSLNLFSTKFDEVISVIERRADQL--DYVLVDTPGQIEIFTWSASGAIIT 174
G+GPNGG++ + D+ + E+ L DY++ D PGQIE+FT
Sbjct: 66 LGMGPNGGLIYCMEHLEDNLDDWLD--EQLDGYLDDDYLVFDCPGQIELFTHVPVLRNFV 123
Query: 175 EAFA-STFPTVVAYVVDTPRSTSPVTFMSNMLYACSILYKTRLPMILTFNKVDVAKHEFA 233
E F Y +D+ + ++S + + S + + LP I +K+D+ ++
Sbjct: 124 EHLKRKNFNVCAVYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVANKKD 183
Query: 234 LE 235
+E
Sbjct: 184 VE 185
>Os02g0555000 Protein of unknown function, ATP binding family protein
Length = 304
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Query: 57 IVIGMAGTGKTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVMKE 116
+VIG G+GKTT+ + + + V+NLDPA LP+ I+I D ++ +VM E
Sbjct: 6 VVIGPPGSGKTTYCNGMSQFLSLVGRKVAVINLDPANDVLPYECAINIEDLIKLSDVMSE 65
Query: 117 YGLGPNGGILTSLNLFSTKFDEVISVIERRADQL---DYVLVDTPGQIEI-FTWSASGAI 172
+ LGPNGG++ ++ D +E + L Y+L D PGQ+E+ F S + +I
Sbjct: 66 HSLGPNGGLVYCMDYLEKNIDW----LEEKLKPLIEDHYLLFDFPGQVELFFLHSNARSI 121
Query: 173 ITEAFASTFPTVVA-YVVDTPRSTSPVTFMSNMLYACSILYKTRLPMILTFNKVDVAKH- 230
I + + A +++D P ++S +L + S + LP I +K+D+ ++
Sbjct: 122 IYKLIKKLNLRLTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIENY 181
Query: 231 ---EFALEWMEDFE 241
F L + D E
Sbjct: 182 GNLAFNLNFYTDVE 195
>Os03g0714400 Protein of unknown function, ATP binding family protein
Length = 136
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 57 IVIGMAGTGKTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVMKE 116
+VIG AG+GK+T+ L H + +++NLDPA + + DIR+ + +VM+E
Sbjct: 6 LVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLDDVMEE 65
Query: 117 YGLGPNGGILTSLNLFSTKFDEVI-SVIERRADQLDYVLVDTPGQ 160
G+GPNGG++ + D+ + +E D DY++ D PG
Sbjct: 66 LGMGPNGGLIYCMEHLEDNLDDWLDEQLEGYLDD-DYLVFDCPGN 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,600,685
Number of extensions: 349700
Number of successful extensions: 1252
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1246
Number of HSP's successfully gapped: 4
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)