Os02g0555000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function, ATP binding family protein.
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Os02g0555000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function, ATP binding family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.82 | 0.243 | 10.6 | -1.17 | 0.346 | -0.876 | -0.0508 | -0.0276 | -0.212 | 4.79 | 27.7 | 65 | -- | -- |
| 26.82 | 0.241 | 10.6 | -1.18 | 0.347 | -0.875 | -0.0575 | -- | -0.213 | 4.79 | 27.75 | 65 | -- | -- |
| 26.83 | 0.241 | 10.6 | -1.17 | 0.347 | -0.877 | -- | -0.0489 | -0.211 | 4.81 | 27.74 | 65 | -- | -- |
| 26.83 | 0.241 | 10.6 | -1.18 | 0.347 | -0.876 | -- | -- | -0.213 | 4.81 | 27.77 | 65 | -- | -- |
| 30.54 | 0.259 | 10.6 | -1.1 | -- | -0.734 | -- | -0.16 | -0.15 | -- | 24.8 | 50 | -- | -- |
| 37.39 | 0.287 | 10.6 | -0.962 | 0.194 | -- | 0.172 | -- | -0.0229 | 8.24 | -- | -- | -- | -- |
| 37.47 | 0.287 | 10.6 | -0.958 | 0.195 | -- | -- | -- | -0.0233 | 8 | -- | -- | -- | -- |
| 30.59 | 0.259 | 10.6 | -1.12 | -- | -0.721 | -- | -- | -0.155 | -- | 24.84 | 38 | -- | -- |
| 59.28 | 0.361 | 10.6 | -- | 0.214 | -0.387 | -- | -- | 0.0103 | 6.13 | 27.77 | 65 | -- | -- |
| 39.55 | 0.294 | 10.6 | -0.956 | -- | -- | -- | -- | -0.0208 | -- | -- | -- | -- | -- |
| 61.66 | 0.367 | 10.5 | -- | 0.19 | -- | -- | -- | 0.0834 | 8.36 | -- | -- | -- | -- |
| 61.17 | 0.365 | 10.6 | -- | -- | -0.362 | -- | -- | 0.0239 | -- | 25.1 | 36 | -- | -- |
| 63.66 | 0.372 | 10.5 | -- | -- | -- | -- | -- | 0.0853 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 2 | 27.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 6 | 27.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 7 | 27.28 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 9 | 27.32 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 10 | 27.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 13 | 27.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 16 | 27.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 23 | 27.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 43 | 27.69 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 44 | 27.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 55 | 27.76 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 64 | 27.79 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 66 | 27.79 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 77 | 27.88 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 116 | 28.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 208 | 28.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 228 | 28.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 242 | 28.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 322 | 28.72 | temperature | 15 | 90 | > th | dose dependent | sin | 9 | NA |
| 328 | 28.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 352 | 28.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 408 | 28.90 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 415 | 28.92 | temperature | 30 | 90 | < th | dose dependent | sin | 9 | NA |
| 450 | 28.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 452 | 28.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 511 | 29.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 533 | 29.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 3 |
| 559 | 29.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 606 | 29.12 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 647 | 29.15 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 698 | 29.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 743 | 29.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 17 |
| 826 | 29.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |