BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0555000 Os02g0555000|AK121253
         (304 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22370.1  | chr5:7406587-7408509 FORWARD LENGTH=299            502   e-142
AT4G12790.1  | chr4:7517280-7518892 REVERSE LENGTH=272            186   9e-48
AT4G21800.1  | chr4:11573289-11574976 FORWARD LENGTH=380           80   1e-15

>AT5G22370.1 | chr5:7406587-7408509 FORWARD LENGTH=299
          Length = 298

 Score =  502 bits (1292), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/296 (81%), Positives = 271/296 (91%)

Query: 1   MVFGQVVIGPPGSGKTTYCNGMSQFLSLVGRKVAVINLDPANDVLPYECAINIEDLIKLS 60
           MVFGQVVIGPPGSGKTTYCNGMSQFLSL+GRKVA++NLDPAND LPYEC +NIE+LIKL 
Sbjct: 1   MVFGQVVIGPPGSGKTTYCNGMSQFLSLMGRKVAIVNLDPANDALPYECGVNIEELIKLE 60

Query: 61  DVMSEHSLGPNGGLVYCMDYLEKNIDWLEEKLKPLIEDHYLLFDFPGQVELFFLHSNARS 120
           DVMSEHSLGPNGGLVYCM+YLEKNIDWLE KLKPL++DHY+LFDFPGQVELFF+H + ++
Sbjct: 61  DVMSEHSLGPNGGLVYCMEYLEKNIDWLESKLKPLLKDHYILFDFPGQVELFFIHDSTKN 120

Query: 121 IIYKLIKKLNLRLTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIEN 180
           ++ KLIK LNLRLTAV LID+HLCCDPG YVS+LLLSLSTMLHMELPH+NVLSKIDLI +
Sbjct: 121 VLTKLIKSLNLRLTAVQLIDSHLCCDPGNYVSSLLLSLSTMLHMELPHVNVLSKIDLIGS 180

Query: 181 YGNLAFNLNFYTDVEDLSYLQRHLDQDPRSAKYRKLTKELCDVIDDFGLVNFTTLDIQDK 240
           YG LAFNL+FYTDV+DLSYL+ HL QDPRSAKYRKLTKELC VI+D+ LVNFTTLDIQDK
Sbjct: 181 YGKLAFNLDFYTDVQDLSYLEHHLSQDPRSAKYRKLTKELCSVIEDYSLVNFTTLDIQDK 240

Query: 241 ESVGNLVKLIDKSNGYIFSSIDSSVVEFSKIAAAPLDWDYYRTAEVQEKYMKDDEF 296
           ESVG+LVKLIDKSNGYIF+ ID+SVVE+SKIA    DWDY R A VQEKYM+D+E 
Sbjct: 241 ESVGDLVKLIDKSNGYIFAGIDASVVEYSKIAIGQTDWDYNRVAAVQEKYMEDEEI 296



>AT4G12790.1 | chr4:7517280-7518892 REVERSE LENGTH=272
          Length = 271

 Score =  186 bits (473), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 96/252 (38%), Positives = 161/252 (63%), Gaps = 8/252 (3%)

Query: 1   MVFGQVVIGPPGSGKTTYCNGMSQFLSLVGRKVAVINLDPANDVLPYECAINIEDLIKLS 60
           M + Q+VIGP GSGK+TYC+ + +    +GR + V+NLDPA ++  Y  A++I +LI L 
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYEHCETIGRTMHVVNLDPAAEIFNYPVAMDIRELISLE 60

Query: 61  DVMSEHSLGPNGGLVYCMDYLEKNI-DWLEEKLKPLIEDHYLLFDFPGQVELFFLHSNAR 119
           DVM +  LGPNG L+YCM+YLE ++ DW++E+L+   +D YL+FD PGQ+EL F H    
Sbjct: 61  DVMEDLKLGPNGALMYCMEYLEDSLHDWVDEELENYRDDDYLIFDCPGQIEL-FTHVPVL 119

Query: 120 SIIYKLIKKLNLRLTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIE 179
               + +K+ N  +  V+L+D+    D  K++S  + SL+ M+ +ELPH+N+LSK+DL++
Sbjct: 120 KNFVEHLKQKNFNVCVVYLLDSQFITDVTKFISGCMSSLAAMIQLELPHVNILSKMDLLQ 179

Query: 180 NYGNLAFNLNFYTDVEDLSYLQRHLDQDPRSAKYRKLTKELCDVIDDFGLVNFTTLDIQD 239
           +  N+   LN       L+ L + +       +Y KL K L +++ ++G+VNF  ++++ 
Sbjct: 180 DKSNIDDYLNPEPRTL-LAELNKRM-----GPQYAKLNKALIEMVGEYGMVNFIPINLRK 233

Query: 240 KESVGNLVKLID 251
           ++S+  ++  ID
Sbjct: 234 EKSIQYVLSQID 245



>AT4G21800.1 | chr4:11573289-11574976 FORWARD LENGTH=380
          Length = 379

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 7/191 (3%)

Query: 6   VVIGPPGSGKTTYCNGMSQFLSLVGRKVAVINLDPANDVLPYECAINIEDLIKLSDVMSE 65
           +V+G  GSGKT++ + +            V+NLDPA   LP+   I+I D +K  +VM +
Sbjct: 45  IVVGMAGSGKTSFLHRLVCHTFDSKSHGYVVNLDPAVMSLPFGANIDIRDTVKYKEVMKQ 104

Query: 66  HSLGPNGGLVYCMDYLEKNIDWLEEKLKPLIED-HYLLFDFPGQVELFFLHSNARSIIYK 124
           ++LGPNGG++  ++      D +   ++   +   Y+L D PGQ+E+F   ++   I   
Sbjct: 105 YNLGPNGGILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEA 164

Query: 125 LIKKLNLRLTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIENYGNL 184
                   +T  +++D      P  ++S +L + S +    LP +   +K D+ ++    
Sbjct: 165 FASTFPTVVT--YVVDTPRSSSPITFMSNMLYACSILYKTRLPLVLAFNKTDVADH---- 218

Query: 185 AFNLNFYTDVE 195
            F L +  D E
Sbjct: 219 KFALEWMEDFE 229



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,874,319
Number of extensions: 297682
Number of successful extensions: 1086
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1081
Number of HSP's successfully gapped: 3
Length of query: 304
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 206
Effective length of database: 8,419,801
Effective search space: 1734479006
Effective search space used: 1734479006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)