BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0555000 Os02g0555000|AK121253
(304 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0555000 Protein of unknown function, ATP binding famil... 624 e-179
Os03g0337700 Protein of unknown function, ATP binding famil... 206 2e-53
Os03g0714400 Protein of unknown function, ATP binding famil... 121 7e-28
Os03g0312600 Similar to XPA-binding protein 1 (HUSSY-23) 95 7e-20
>Os02g0555000 Protein of unknown function, ATP binding family protein
Length = 304
Score = 624 bits (1609), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLVGRKVAVINLDPANDVLPYECAINIEDLIKLS 60
MVFGQVVIGPPGSGKTTYCNGMSQFLSLVGRKVAVINLDPANDVLPYECAINIEDLIKLS
Sbjct: 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLVGRKVAVINLDPANDVLPYECAINIEDLIKLS 60
Query: 61 DVMSEHSLGPNGGLVYCMDYLEKNIDWLEEKLKPLIEDHYLLFDFPGQVELFFLHSNARS 120
DVMSEHSLGPNGGLVYCMDYLEKNIDWLEEKLKPLIEDHYLLFDFPGQVELFFLHSNARS
Sbjct: 61 DVMSEHSLGPNGGLVYCMDYLEKNIDWLEEKLKPLIEDHYLLFDFPGQVELFFLHSNARS 120
Query: 121 IIYKLIKKLNLRLTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIEN 180
IIYKLIKKLNLRLTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIEN
Sbjct: 121 IIYKLIKKLNLRLTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIEN 180
Query: 181 YGNLAFNLNFYTDVEDLSYLQRHLDQDPRSAKYRKLTKELCDVIDDFGLVNFTTLDIQDK 240
YGNLAFNLNFYTDVEDLSYLQRHLDQDPRSAKYRKLTKELCDVIDDFGLVNFTTLDIQDK
Sbjct: 181 YGNLAFNLNFYTDVEDLSYLQRHLDQDPRSAKYRKLTKELCDVIDDFGLVNFTTLDIQDK 240
Query: 241 ESVGNLVKLIDKSNGYIFSSIDSSVVEFSKIAAAPLDWDYYRTAEVQEKYMKDDEFVQKT 300
ESVGNLVKLIDKSNGYIFSSIDSSVVEFSKIAAAPLDWDYYRTAEVQEKYMKDDEFVQKT
Sbjct: 241 ESVGNLVKLIDKSNGYIFSSIDSSVVEFSKIAAAPLDWDYYRTAEVQEKYMKDDEFVQKT 300
Query: 301 SKTR 304
SKTR
Sbjct: 301 SKTR 304
>Os03g0337700 Protein of unknown function, ATP binding family protein
Length = 265
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 162/257 (63%), Gaps = 8/257 (3%)
Query: 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLVGRKVAVINLDPANDVLPYECAINIEDLIKLS 60
M + Q+VIGP GSGK+TYC+ + Q VGR + ++NLDPA + Y + +I +LI L
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLD 60
Query: 61 DVMSEHSLGPNGGLVYCMDYLEKNI-DWLEEKLKPLIEDHYLLFDFPGQVELFFLHSNAR 119
DVM E +GPNGGL+YCM++LE N+ DWL+E+L ++D YL+FD PGQ+ELF R
Sbjct: 61 DVMEELGMGPNGGLIYCMEHLEDNLDDWLDEQLDGYLDDDYLVFDCPGQIELFTHVPVLR 120
Query: 120 SIIYKLIKKLNLRLTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIE 179
+ + L K+ N + AV+ +D+ D KY+S + SLS M+ +ELPHIN+LSK+DL+
Sbjct: 121 NFVEHL-KRKNFNVCAVYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVA 179
Query: 180 NYGNLAFNLNFYTDVEDLSYLQRHLDQDPRSAKYRKLTKELCDVIDDFGLVNFTTLDIQD 239
N ++ LN V LS L R + + K+ KL K L +++DD+ +VNF LD++
Sbjct: 180 NKKDVEEYLNPEAQVL-LSQLNRQM-----APKFGKLNKSLAELVDDYSMVNFIPLDLRK 233
Query: 240 KESVGNLVKLIDKSNGY 256
+ S+ ++ ID Y
Sbjct: 234 ESSIQYVLSHIDNCIQY 250
>Os03g0714400 Protein of unknown function, ATP binding family protein
Length = 136
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 82/117 (70%), Gaps = 5/117 (4%)
Query: 1 MVFGQVVIGPPGSGKTTYCNGMSQFLSLVGRKVAVINLDPANDVLPYECAINIEDLIKLS 60
M + Q+VIGP GSGK+TYC+ + Q VGR + ++NLDPA + Y + +I +LI L
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLD 60
Query: 61 DVMSEHSLGPNGGLVYCMDYLEKNI-DWLEEKLKPLIEDHYLLFDFPGQVELFFLHS 116
DVM E +GPNGGL+YCM++LE N+ DWL+E+L+ ++D YL+FD PG FL+S
Sbjct: 61 DVMEELGMGPNGGLIYCMEHLEDNLDDWLDEQLEGYLDDDYLVFDCPGN----FLYS 113
>Os03g0312600 Similar to XPA-binding protein 1 (HUSSY-23)
Length = 396
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 18/226 (7%)
Query: 6 VVIGPPGSGKTTYCNGMSQFLSLVGRKVAVINLDPANDVLPYECAINIEDLIKLSDVMSE 65
+VIG G+GKTT+ + + + V+NLDPA LP+ I+I D ++ +VM E
Sbjct: 57 IVIGMAGTGKTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVMKE 116
Query: 66 HSLGPNGGLVYCMDYLEKNIDW----LEEKLKPLIEDHYLLFDFPGQVELFFLHSNARSI 121
+ LGPNGG++ ++ D +E + L Y+L D PGQ+E+F ++ +I
Sbjct: 117 YGLGPNGGILTSLNLFSTKFDEVISVIERRADQL---DYVLVDTPGQIEIFTWSASG-AI 172
Query: 122 IYKLIKKLNLRLTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDLIENY 181
I + + A +++D P ++S +L + S + LP I +K+D+ ++
Sbjct: 173 ITEAFASTFPTVVA-YVVDTPRSTSPVTFMSNMLYACSILYKTRLPMILTFNKVDVAKH- 230
Query: 182 GNLAFNLNFYTDVEDLSYLQRHLDQDPRSAKYRKLTKELCDVIDDF 227
F L + +ED Q LD D S+ T+ L V+D+F
Sbjct: 231 ---EFALEW---MEDFEAFQTALDSD--SSYSSTFTRSLSLVLDEF 268
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.139 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,149,433
Number of extensions: 407237
Number of successful extensions: 1103
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1096
Number of HSP's successfully gapped: 4
Length of query: 304
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 204
Effective length of database: 11,814,401
Effective search space: 2410137804
Effective search space used: 2410137804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)