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Os03g0337700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function, ATP binding family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.36 (0.0181) R2 : 0.0298
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.142 (0.038) R2dN8 : 0.0385 R2N8 : 0.0298
σ : 0.34
deviance : 53.04
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.42 0.276 8.3 0.406 0.461 -0.0307 0.325 4.03 -0.0802 12.9 29.48 598 -- --
34.67 0.274 8.34 0.0997 0.459 0.414 0.301 -- -0.0785 12.8 31.24 589 -- --
34.85 0.275 8.3 0.42 0.459 -0.0365 -- 4.04 -0.0787 12.9 29.38 590 -- --
35.08 0.276 8.34 0.11 0.462 0.404 -- -- -0.087 12.9 31.37 593 -- --
47 0.319 8.36 0.0733 -- 0.682 -- -1.32 -0.0986 -- 28.68 262 -- --
37.93 0.289 8.35 0.145 0.483 -- 0.345 -- -0.118 13.8 -- -- -- --
38.4 0.29 8.35 0.156 0.483 -- -- -- -0.116 13.8 -- -- -- --
42.63 0.305 8.37 0.0455 -- 0.629 -- -- -0.195 -- 24.11 19 -- --
35.39 0.277 8.34 -- 0.46 0.421 -- -- -0.0971 12.9 31.34 598 -- --
52.56 0.339 8.35 0.136 -- -- -- -- -0.127 -- -- -- -- --
39.04 0.292 8.35 -- 0.481 -- -- -- -0.134 13.8 -- -- -- --
42.47 0.304 8.37 -- -- 0.644 -- -- -0.203 -- 24.1 14 -- --
53.04 0.34 8.36 -- -- -- -- -- -0.142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.77 wind 1.0 14400 > th dose independent rect. 1 2
2 33.81 wind 1.0 14400 < th dose dependent rect. 2 1
4 34.03 temperature 30.0 270 < th dose independent rect. 11 17
5 34.04 precipitation 0.1 43200 > th dose dependent rect. 17 2
7 34.12 wind 1.0 14400 < th dose independent rect. 1 2
9 34.13 humidity 70.0 270 > th dose independent rect. 12 16
11 34.19 humidity 70.0 270 > th dose independent rect. 16 12
15 34.21 temperature 30.0 720 < th dose independent rect. 23 16
16 34.22 humidity 50.0 14400 > th dose independent rect. 16 19
19 34.25 temperature 25.0 270 > th dose dependent rect. 16 16
26 34.30 temperature 25.0 270 > th dose dependent sin 12 NA
27 34.31 humidity 50.0 14400 < th dose independent rect. 16 19
32 34.34 humidity 50.0 14400 > th dose independent rect. 17 17
37 34.39 wind 1.0 14400 > th dose independent rect. 24 5
41 34.41 humidity 50.0 14400 < th dose independent sin 11 NA
42 34.41 humidity 50.0 14400 > th dose independent rect. 15 3
43 34.41 humidity 50.0 14400 < th dose independent rect. 15 3
49 34.41 humidity 50.0 14400 > th dose independent rect. 15 9
55 34.41 humidity 50.0 14400 > th dose independent rect. 15 14
79 34.43 temperature 30.0 270 < th dose independent rect. 15 13
93 34.48 temperature 30.0 720 < th dose independent rect. 3 8
96 34.50 temperature 25.0 30 > th dose dependent rect. 16 17
97 34.51 humidity 70.0 30 < th dose independent rect. 16 4
98 34.51 wind 1.0 14400 < th dose independent rect. 24 5
112 34.52 precipitation 0.1 43200 < th dose independent rect. 16 2
114 34.52 precipitation 0.1 43200 < th dose dependent rect. 16 2
120 34.54 humidity 50.0 14400 > th dose independent sin 11 NA
124 34.54 humidity 50.0 14400 < th dose dependent rect. 16 17
129 34.55 humidity 50.0 14400 < th dose dependent rect. 16 2
145 34.55 humidity 50.0 14400 < th dose dependent rect. 16 19
146 34.56 temperature 30.0 720 < th dose independent sin 5 NA
147 34.56 temperature 25.0 4320 > th dose independent rect. 2 1
154 34.57 precipitation 0.1 43200 > th dose independent rect. 16 2
156 34.57 temperature 30.0 720 > th dose dependent rect. 10 6
177 34.59 temperature 30.0 720 > th dose independent rect. 9 8
199 34.60 temperature 25.0 10 > th dose dependent rect. 17 15
200 34.61 temperature 25.0 4320 > th dose independent rect. 1 3
204 34.62 temperature 30.0 720 > th dose independent rect. 9 6
209 34.63 temperature 30.0 270 < th dose independent rect. 10 9
245 34.64 temperature 30.0 720 > th dose dependent rect. 13 3
247 34.64 temperature 25.0 4320 > th dose dependent rect. 24 4
252 34.65 temperature 30.0 720 > th dose dependent sin 3 NA
258 34.66 humidity 60.0 720 > th dose independent rect. 11 2
263 34.66 temperature 25.0 4320 > th dose dependent rect. 1 1
270 34.67 temperature 30.0 720 > th dose independent sin 3 NA
304 34.69 temperature 25.0 4320 < th dose independent rect. 3 1
340 34.70 temperature 25.0 30 > th dose dependent rect. 16 19
386 34.74 temperature 30.0 720 < th dose independent rect. 1 14
391 34.74 temperature 30.0 720 < th dose independent rect. 3 23
401 34.75 humidity 70.0 90 < th dose independent rect. 16 17
433 34.77 temperature 30.0 720 < th dose independent rect. 11 2
457 34.78 temperature 30.0 720 < th dose independent rect. 19 22
467 34.80 humidity 70.0 30 > th dose independent sin 12 NA
487 34.80 temperature 25.0 30 > th dose dependent rect. 16 6
497 34.81 temperature 30.0 720 < th dose independent rect. 1 23
503 34.82 temperature 30.0 270 < th dose independent sin 13 NA
506 34.82 humidity 60.0 14400 > th dose independent rect. 10 3
518 34.82 temperature 30.0 720 > th dose dependent rect. 15 1
544 34.83 temperature 30.0 720 > th dose dependent no NA NA
675 34.85 humidity 60.0 14400 > th dose independent rect. 8 6
681 34.85 temperature 30.0 720 > th dose independent rect. 15 23
683 34.85 humidity 80.0 270 < th dose dependent rect. 16 7
709 34.86 humidity 60.0 14400 > th dose independent rect. 19 19
718 34.86 precipitation 0.1 43200 > th dose dependent rect. 20 1
740 34.87 temperature 30.0 270 > th dose independent sin 13 NA
746 34.87 humidity 70.0 270 < th dose independent rect. 16 4
778 34.87 temperature 30.0 720 > th dose dependent rect. 13 23
815 34.89 temperature 30.0 720 > th dose independent no NA NA
817 34.89 humidity 70.0 90 < th dose independent sin 12 NA
936 34.89 temperature 30.0 720 > th dose dependent rect. 15 23
938 34.90 temperature 30.0 720 < th dose independent rect. 9 4
949 34.90 radiation 1.0 270 > th dose dependent rect. 16 15
965 34.92 temperature 30.0 720 < th dose independent no NA NA
966 34.92 radiation 20.0 270 > th dose independent rect. 16 1
985 34.92 temperature 25.0 10 > th dose independent rect. 16 17