BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0337700 Os03g0337700|AK065183
         (265 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12790.1  | chr4:7517280-7518892 REVERSE LENGTH=272            424   e-119
AT5G22370.1  | chr5:7406587-7408509 FORWARD LENGTH=299            191   5e-49
AT4G21800.1  | chr4:11573289-11574976 FORWARD LENGTH=380           80   9e-16

>AT4G12790.1 | chr4:7517280-7518892 REVERSE LENGTH=272
          Length = 271

 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 191/259 (73%), Positives = 236/259 (91%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLD 60
           MGYAQLVIGPAGSGKSTYCSSLY+HCET+GRT+H+VNLDPAAE F+YPV+ DIRELISL+
Sbjct: 1   MGYAQLVIGPAGSGKSTYCSSLYEHCETIGRTMHVVNLDPAAEIFNYPVAMDIRELISLE 60

Query: 61  DVMEELGMGPNGGLIYCMEHLEDNLDDWLDEQLDGYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVME+L +GPNG L+YCME+LED+L DW+DE+L+ Y DDDYL+FDCPGQIELFTHVPVL+
Sbjct: 61  DVMEDLKLGPNGALMYCMEYLEDSLHDWVDEELENYRDDDYLIFDCPGQIELFTHVPVLK 120

Query: 121 NFVEHLKRKNFNVCAVYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVAN 180
           NFVEHLK+KNFNVC VY LDSQF++DVTK+ISGCM+SL+AMIQLELPH+NILSKMDL+ +
Sbjct: 121 NFVEHLKQKNFNVCVVYLLDSQFITDVTKFISGCMSSLAAMIQLELPHVNILSKMDLLQD 180

Query: 181 KKDVEEYLNPEAQVLLSQLNRQMAPKFGKLNKSLAELVDDYSMVNFIPLDLRKESSIQYV 240
           K ++++YLNPE + LL++LN++M P++ KLNK+L E+V +Y MVNFIP++LRKE SIQYV
Sbjct: 181 KSNIDDYLNPEPRTLLAELNKRMGPQYAKLNKALIEMVGEYGMVNFIPINLRKEKSIQYV 240

Query: 241 LSHIDNCIQYGVDADVKVR 259
           LS ID CIQ+G DADV ++
Sbjct: 241 LSQIDVCIQFGEDADVNIK 259



>AT5G22370.1 | chr5:7406587-7408509 FORWARD LENGTH=299
          Length = 298

 Score =  191 bits (484), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 160/266 (60%), Gaps = 11/266 (4%)

Query: 1   MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLD 60
           M + Q+VIGP GSGK+TYC+ + Q    +GR + +VNLDPA +   Y    +I ELI L+
Sbjct: 1   MVFGQVVIGPPGSGKTTYCNGMSQFLSLMGRKVAIVNLDPANDALPYECGVNIEELIKLE 60

Query: 61  DVMEELGMGPNGGLIYCMEHLEDNLDDWLDEQLDGYLDDDYLVFDCPGQIELFTHVPVLR 120
           DVM E  +GPNGGL+YCME+LE N+ DWL+ +L   L D Y++FD PGQ+ELF      +
Sbjct: 61  DVMSEHSLGPNGGLVYCMEYLEKNI-DWLESKLKPLLKDHYILFDFPGQVELFFIHDSTK 119

Query: 121 NFVEHL-KRKNFNVCAVYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVA 179
           N +  L K  N  + AV  +DS    D   Y+S  + SLS M+ +ELPH+N+LSK+DL+ 
Sbjct: 120 NVLTKLIKSLNLRLTAVQLIDSHLCCDPGNYVSSLLLSLSTMLHMELPHVNVLSKIDLIG 179

Query: 180 NKKDVEEYLNPEAQVL-LSQLNRQM-----APKFGKLNKSLAELVDDYSMVNFIPLDLRK 233
           +   +   L+    V  LS L   +     + K+ KL K L  +++DYS+VNF  LD++ 
Sbjct: 180 SYGKLAFNLDFYTDVQDLSYLEHHLSQDPRSAKYRKLTKELCSVIEDYSLVNFTTLDIQD 239

Query: 234 ESSIQYVLSHIDNCIQY---GVDADV 256
           + S+  ++  ID    Y   G+DA V
Sbjct: 240 KESVGDLVKLIDKSNGYIFAGIDASV 265



>AT4G21800.1 | chr4:11573289-11574976 FORWARD LENGTH=380
          Length = 379

 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 6   LVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLDDVMEE 65
           +V+G AGSGK+++   L  H        ++VNLDPA     +  + DIR+ +   +VM++
Sbjct: 45  IVVGMAGSGKTSFLHRLVCHTFDSKSHGYVVNLDPAVMSLPFGANIDIRDTVKYKEVMKQ 104

Query: 66  LGMGPNGGLIYCMEHLEDNLDD---WLDEQLDGYLDDDYLVFDCPGQIELFTHVPVLRNF 122
             +GPNGG++  +       D+    ++++ D     DY++ D PGQIE+FT        
Sbjct: 105 YNLGPNGGILTSLNLFATKFDEVVSVIEKRADQL---DYVLVDTPGQIEIFTWSASGAII 161

Query: 123 VEHLKRKNFNVCAVYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVANKK 182
            E      F     Y +D+   S    ++S  + + S + +  LP +   +K D+  +K 
Sbjct: 162 TEAFA-STFPTVVTYVVDTPRSSSPITFMSNMLYACSILYKTRLPLVLAFNKTDVADHKF 220

Query: 183 DVE 185
            +E
Sbjct: 221 ALE 223



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,006,827
Number of extensions: 259592
Number of successful extensions: 919
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 3
Length of query: 265
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 168
Effective length of database: 8,447,217
Effective search space: 1419132456
Effective search space used: 1419132456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)