Os03g0312600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to XPA-binding protein 1 (HUSSY-23).
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Os03g0312600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to XPA-binding protein 1 (HUSSY-23).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.14 | 0.27 | 9.07 | 0.658 | 1.15 | 0.543 | 0.237 | -0.418 | -0.159 | 16.1 | 80 | 1361 | -- | -- |
| 33.27 | 0.269 | 9.08 | 0.639 | 1.15 | 0.501 | 0.219 | -- | -0.16 | 16.2 | 80 | 1307 | -- | -- |
| 33.29 | 0.269 | 9.07 | 0.659 | 1.15 | 0.54 | -- | -0.358 | -0.157 | 16.1 | 80 | 1329 | -- | -- |
| 33.4 | 0.269 | 9.08 | 0.627 | 1.14 | 0.522 | -- | -- | -0.164 | 16.2 | 80.06 | 1314 | -- | -- |
| 77.78 | 0.413 | 9.08 | 0.557 | -- | -0.558 | -- | -0.173 | -0.224 | -- | 80 | 1329 | -- | -- |
| 36.76 | 0.284 | 9.08 | 0.613 | 1.19 | -- | 0.283 | -- | -0.198 | 16.1 | -- | -- | -- | -- |
| 36.99 | 0.285 | 9.08 | 0.616 | 1.19 | -- | -- | -- | -0.196 | 16.1 | -- | -- | -- | -- |
| 75.18 | 0.406 | 9.08 | 0.518 | -- | -0.616 | -- | -- | -0.234 | -- | 73 | 1215 | -- | -- |
| 43.07 | 0.306 | 9.08 | -- | 1.14 | 0.515 | -- | -- | -0.183 | 16.2 | 82.37 | 2784 | -- | -- |
| 113.6 | 0.498 | 9.08 | 0.568 | -- | -- | -- | -- | -0.228 | -- | -- | -- | -- | -- |
| 46.99 | 0.321 | 9.1 | -- | 1.18 | -- | -- | -- | -0.265 | 16.1 | -- | -- | -- | -- |
| 82.26 | 0.424 | 9.09 | -- | -- | -0.627 | -- | -- | -0.291 | -- | 73 | 1215 | -- | -- |
| 122.1 | 0.516 | 9.09 | -- | -- | -- | -- | -- | -0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.34 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 4 | 29.77 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 5 | 29.82 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 12 | 30.24 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 13 | 30.24 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 15 | 30.29 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 16 | 30.29 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 18 | 30.34 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 21 | 30.37 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 22 | 30.39 | wind | 7.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 29 | 30.49 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 3 |
| 30 | 30.49 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 4 |
| 32 | 30.49 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 38 | 30.56 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 21 |
| 39 | 30.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 41 | 30.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 48 | 30.62 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 57 | 30.66 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 20 |
| 58 | 30.66 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 59 | 30.66 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 69 | 30.72 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 76 | 30.74 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 79 | 30.74 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 81 | 30.74 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 4 |
| 82 | 30.74 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 83 | 30.74 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 84 | 30.74 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 90 | 30.75 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 103 | 30.80 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 109 | 30.84 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 113 | 30.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 116 | 30.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 135 | 30.88 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 152 | 30.89 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 169 | 30.91 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 171 | 30.91 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 182 | 30.95 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 196 | 31.00 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 214 | 31.05 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 216 | 31.06 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 218 | 31.06 | wind | 7.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 220 | 31.07 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 5 |
| 221 | 31.07 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 224 | 31.08 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 243 | 31.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 244 | 31.11 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 250 | 31.12 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 6 |
| 263 | 31.16 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 266 | 31.17 | wind | 5.0 | 10 | < th | dose dependent | rect. | 4 | 3 |
| 267 | 31.17 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 277 | 31.20 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 278 | 31.20 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 325 | 31.26 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 387 | 31.33 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 394 | 31.34 | wind | 9.0 | 90 | < th | dose dependent | rect. | 16 | 11 |
| 403 | 31.35 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 428 | 31.39 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 445 | 31.41 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 465 | 31.43 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 493 | 31.45 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 19 |
| 498 | 31.45 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 19 |
| 512 | 31.47 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 534 | 31.51 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 536 | 31.51 | temperature | 30.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 537 | 31.51 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 540 | 31.51 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 541 | 31.51 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 543 | 31.51 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 19 |
| 589 | 31.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 613 | 31.60 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 619 | 31.60 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 623 | 31.60 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 690 | 31.68 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 698 | 31.69 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 700 | 31.70 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 722 | 31.72 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 727 | 31.73 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 748 | 31.75 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 752 | 31.75 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 756 | 31.75 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 759 | 31.76 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 19 |
| 779 | 31.77 | radiation | 20.0 | 10 | < th | dose independent | rect. | 4 | 3 |
| 788 | 31.77 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 4 | 4 |
| 794 | 31.77 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 861 | 31.82 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 873 | 31.84 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 883 | 31.85 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 934 | 31.89 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 11 |
| 949 | 31.90 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 960 | 31.91 | wind | 7.0 | 90 | < th | dose dependent | rect. | 21 | 6 |