Os03g0714400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function, ATP binding family protein.
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Os03g0714400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function, ATP binding family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.35 | 0.172 | 11.2 | 0.23 | 0.174 | 0.32 | -0.22 | -0.0912 | 0.0184 | 18.8 | 22.9 | 2107 | -- | -- |
| 13.28 | 0.17 | 11.2 | 0.232 | 0.176 | 0.332 | -0.281 | -- | 0.0106 | 18.6 | 22.3 | 2001 | -- | -- |
| 13.29 | 0.17 | 11.3 | 0.204 | 0.176 | 0.349 | -- | 0.0447 | -0.00402 | 18.5 | 22.1 | 1986 | -- | -- |
| 13.29 | 0.17 | 11.2 | 0.216 | 0.175 | 0.348 | -- | -- | -0.00157 | 18.5 | 22.16 | 1986 | -- | -- |
| 14.73 | 0.179 | 11.2 | 0.204 | -- | 0.357 | -- | 0.0255 | 0.00686 | -- | 22.2 | 1479 | -- | -- |
| 17.49 | 0.196 | 11.3 | 0.071 | 0.165 | -- | -0.213 | -- | -0.12 | 18.2 | -- | -- | -- | -- |
| 17.6 | 0.196 | 11.3 | 0.0736 | 0.164 | -- | -- | -- | -0.12 | 18.1 | -- | -- | -- | -- |
| 14.7 | 0.179 | 11.2 | 0.196 | -- | 0.344 | -- | -- | -0.0102 | -- | 22.19 | 1473 | -- | -- |
| 14.33 | 0.176 | 11.3 | -- | 0.169 | 0.282 | -- | -- | -0.0383 | 18.5 | 22.5 | 1974 | -- | -- |
| 18.99 | 0.204 | 11.3 | 0.069 | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
| 17.75 | 0.197 | 11.3 | -- | 0.163 | -- | -- | -- | -0.128 | 18.1 | -- | -- | -- | -- |
| 15.6 | 0.184 | 11.3 | -- | -- | 0.284 | -- | -- | -0.0426 | -- | 22.42 | 1418 | -- | -- |
| 19.12 | 0.204 | 11.3 | -- | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.35 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 4 | 13.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 6 | 13.48 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 7 | 13.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 11 | 13.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 22 | 13.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 29 | 13.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 31 | 13.53 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 174 | 13.62 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 222 | 13.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 342 | 13.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 422 | 13.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 477 | 13.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 858 | 13.77 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 974 | 13.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |