BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0298700 Os03g0298700|Os03g0298700
(1287 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0298700 Conserved hypothetical protein 2417 0.0
Os03g0816900 Conserved hypothetical protein 198 2e-50
Os01g0208600 Actin-binding WH2 domain containing protein 174 4e-43
Os03g0817000 Actin-binding WH2 domain containing protein 81 6e-15
Os07g0691700 Conserved hypothetical protein 73 1e-12
>Os03g0298700 Conserved hypothetical protein
Length = 1287
Score = 2417 bits (6265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1193/1277 (93%), Positives = 1193/1277 (93%)
Query: 1 MPLSRHEVGNEYSLGGRELYRRANQHDPEAVLDGVAMAGLVGVLRQLGDLAEFAAQVFHG 60
MPLSRHEVGNEYSLGGRELYRRANQHDPEAVLDGVAMAGLVGVLRQLGDLAEFAAQVFHG
Sbjct: 1 MPLSRHEVGNEYSLGGRELYRRANQHDPEAVLDGVAMAGLVGVLRQLGDLAEFAAQVFHG 60
Query: 61 LYDEVMTASARGHGLMLRVQQLEAELPLVEKDSCHTDYLYVASNRGIEWHSNPRLESGVV 120
LYDEVMTASARGHGLMLRVQQLEAELPLVEKDSCHTDYLYVASNRGIEWHSNPRLESGVV
Sbjct: 61 LYDEVMTASARGHGLMLRVQQLEAELPLVEKDSCHTDYLYVASNRGIEWHSNPRLESGVV 120
Query: 121 TKGDTPRFIMDSIKKCHGPPKLFMLDKYDIGGEGACLKRYTDPSFFKTDSACSSMLEQGI 180
TKGDTPRFIMDSIKKCHGPPKLFMLDKYDIGGEGACLKRYTDPSFFKTDSACSSMLEQGI
Sbjct: 121 TKGDTPRFIMDSIKKCHGPPKLFMLDKYDIGGEGACLKRYTDPSFFKTDSACSSMLEQGI 180
Query: 181 QRERRPLRAMEIRPTLQNSEIFRPPNAANNDSKLETDLSGEALDEVPTRRRQLKYRQLNG 240
QRERRPLRAMEIRPTLQNSEIFRPPNAANNDSKLETDLSGEALDEVPTRRRQLKYRQLNG
Sbjct: 181 QRERRPLRAMEIRPTLQNSEIFRPPNAANNDSKLETDLSGEALDEVPTRRRQLKYRQLNG 240
Query: 241 SVFRSFRPQMQNLYGETSPDEKPCSMNHSEVQISFTDSPDTNTEERDIMVDTFSSMDKGK 300
SVFRSFRPQMQNLYGETSPDEKPCSMNHSEVQISFTDSPDTNTEERDIMVDTFSSMDKGK
Sbjct: 241 SVFRSFRPQMQNLYGETSPDEKPCSMNHSEVQISFTDSPDTNTEERDIMVDTFSSMDKGK 300
Query: 301 ENNYVMAGKNXXXXXXXXXXXXXXXXXXXXKGYNSEVDIYVDALTTMDSEVETDTEHRDH 360
ENNYVMAGKN KGYNSEVDIYVDALTTMDSEVETDTEHRDH
Sbjct: 301 ENNYVMAGKNRLLSEEALSRSSDARSAGSSKGYNSEVDIYVDALTTMDSEVETDTEHRDH 360
Query: 361 GHRALVPVESSKPCSDVHGAAVSGSISFRNNGSMVPNSSDVVPAEEENNDHHQGYVCVPS 420
GHRALVPVESSKPCSDVHGAAVSGSISFRNNGSMVPNSSDVVPAEEENNDHHQGYVCVPS
Sbjct: 361 GHRALVPVESSKPCSDVHGAAVSGSISFRNNGSMVPNSSDVVPAEEENNDHHQGYVCVPS 420
Query: 421 PQAKPVAGEHERSSSLEELFAQEKPVSCEHERTSSLEELLLGDVHPSGHNMRSSATESNT 480
PQAKPVAGEHERSSSLEELFAQEKPVSCEHERTSSLEELLLGDVHPSGHNMRSSATESNT
Sbjct: 421 PQAKPVAGEHERSSSLEELFAQEKPVSCEHERTSSLEELLLGDVHPSGHNMRSSATESNT 480
Query: 481 NGVVSTVESNGTVGTTKKEKDNPIIAGISFKKTASKKSKYVGSMELIVSKVGILPRKLSK 540
NGVVSTVESNGTVGTTKKEKDNPIIAGISFKKTASKKSKYVGSMELIVSKVGILPRKLSK
Sbjct: 481 NGVVSTVESNGTVGTTKKEKDNPIIAGISFKKTASKKSKYVGSMELIVSKVGILPRKLSK 540
Query: 541 KHDPFSDSLRNMAKQLLELKIDGTKDTELYEFEANGEGCDMKCLEMSHPPIEIMGSATQS 600
KHDPFSDSLRNMAKQLLELKIDGTKDTELYEFEANGEGCDMKCLEMSHPPIEIMGSATQS
Sbjct: 541 KHDPFSDSLRNMAKQLLELKIDGTKDTELYEFEANGEGCDMKCLEMSHPPIEIMGSATQS 600
Query: 601 VPPDSPQDNVDSRACRPEEVNQEYDHDVPPSDSPQDSVDGNVFRDIALLRSQEEQQCAGP 660
VPPDSPQDNVDSRACRPEEVNQEYDHDVPPSDSPQDSVDGNVFRDIALLRSQEEQQCAGP
Sbjct: 601 VPPDSPQDNVDSRACRPEEVNQEYDHDVPPSDSPQDSVDGNVFRDIALLRSQEEQQCAGP 660
Query: 661 VTVDNLLDHAPENTQDQIGEHFYREVTEDIHTEVVPENGPDXXXXXXXXXXXXXXXXXXX 720
VTVDNLLDHAPENTQDQIGEHFYREVTEDIHTEVVPENGPD
Sbjct: 661 VTVDNLLDHAPENTQDQIGEHFYREVTEDIHTEVVPENGPDIGEELEEGSITEEKVNEED 720
Query: 721 XXXXXXXXAYTLDENTEYIEEQVVSDDLISSPISSKQSDDPCQMAPLTLTDADDALAGTI 780
AYTLDENTEYIEEQVVSDDLISSPISSKQSDDPCQMAPLTLTDADDALAGTI
Sbjct: 721 VEESNESDAYTLDENTEYIEEQVVSDDLISSPISSKQSDDPCQMAPLTLTDADDALAGTI 780
Query: 781 XXXXXXXXXXXXXXXXDVAVQYNEQCCLHPETSFAQDLTHVSSCEVEGQNEPLPLCSSSM 840
DVAVQYNEQCCLHPETSFAQDLTHVSSCEVEGQNEPLPLCSSSM
Sbjct: 781 TESNVSTVVVESATTNDVAVQYNEQCCLHPETSFAQDLTHVSSCEVEGQNEPLPLCSSSM 840
Query: 841 VGTTPDLSVDTEEIHENPILCIDSSSDLFRDALAPDSRDVPLPNISSFDWMLNGAMQKSL 900
VGTTPDLSVDTEEIHENPILCIDSSSDLFRDALAPDSRDVPLPNISSFDWMLNGAMQKSL
Sbjct: 841 VGTTPDLSVDTEEIHENPILCIDSSSDLFRDALAPDSRDVPLPNISSFDWMLNGAMQKSL 900
Query: 901 NVLPAKPPNGILQENNSSKDTEDAXXXXXXXXXMQWRTTKLQPGPAVLSAKFGRPPRPKP 960
NVLPAKPPNGILQENNSSKDTEDA MQWRTTKLQPGPAVLSAKFGRPPRPKP
Sbjct: 901 NVLPAKPPNGILQENNSSKDTEDAPPPLPPLPPMQWRTTKLQPGPAVLSAKFGRPPRPKP 960
Query: 961 PVKYQENESYSSQDERNREPEILQEASLQNGSTSVTPEKEMVVAKVSNEIQTNIMFGRDS 1020
PVKYQENESYSSQDERNREPEILQEASLQNGSTSVTPEKEMVVAKVSNEIQTNIMFGRDS
Sbjct: 961 PVKYQENESYSSQDERNREPEILQEASLQNGSTSVTPEKEMVVAKVSNEIQTNIMFGRDS 1020
Query: 1021 QESHLKGLNEYDVQASDSFSTSEFKSVGGVASVEGDNLETSQLSELIVIPEEAWSELVDI 1080
QESHLKGLNEYDVQASDSFSTSEFKSVGGVASVEGDNLETSQLSELIVIPEEAWSELVDI
Sbjct: 1021 QESHLKGLNEYDVQASDSFSTSEFKSVGGVASVEGDNLETSQLSELIVIPEEAWSELVDI 1080
Query: 1081 KSISGQEKGGKRQLSTGVFNCNGMHTTGLSAEKRDDYKIYDQNEKNLLAGKGNAIADSEE 1140
KSISGQEKGGKRQLSTGVFNCNGMHTTGLSAEKRDDYKIYDQNEKNLLAGKGNAIADSEE
Sbjct: 1081 KSISGQEKGGKRQLSTGVFNCNGMHTTGLSAEKRDDYKIYDQNEKNLLAGKGNAIADSEE 1140
Query: 1141 KEPNGVTCQDDTKNSDLLVQQEDGQHDXXXXXXXXXXXXFEEEVAKFSPPRVPTPPKYPL 1200
KEPNGVTCQDDTKNSDLLVQQEDGQHD FEEEVAKFSPPRVPTPPKYPL
Sbjct: 1141 KEPNGVTCQDDTKNSDLLVQQEDGQHDSSAGTARESSSSFEEEVAKFSPPRVPTPPKYPL 1200
Query: 1201 FQVTAHDRSMLKRAPTLVQPSIKLSDENNTILEQIKNKSFNLKPVLAKRPNMMGAPRTNL 1260
FQVTAHDRSMLKRAPTLVQPSIKLSDENNTILEQIKNKSFNLKPVLAKRPNMMGAPRTNL
Sbjct: 1201 FQVTAHDRSMLKRAPTLVQPSIKLSDENNTILEQIKNKSFNLKPVLAKRPNMMGAPRTNL 1260
Query: 1261 QVVAILERANAIRQAVA 1277
QVVAILERANAIRQAVA
Sbjct: 1261 QVVAILERANAIRQAVA 1277
>Os03g0816900 Conserved hypothetical protein
Length = 1155
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/207 (49%), Positives = 143/207 (69%), Gaps = 10/207 (4%)
Query: 34 GVAMAGLVGVLRQLGDLAEFAAQVFHGLYDEVMTASARGHGLMLRVQQLEAELPLVEK-- 91
GVAMAGLVGVLRQLGDLAEFAA++FH L+++VM ++RGHGLMLR++QLEAE P VEK
Sbjct: 1 GVAMAGLVGVLRQLGDLAEFAAEIFHDLHEDVMATASRGHGLMLRLRQLEAEFPAVEKAI 60
Query: 92 --DSCHTDYLYVASNRGIEWHSNPRLESGVVTKGDTPRFIMDSIKKCHGPPKLFMLDKYD 149
S H++Y + + G+EWH+N +++ ++T+GD PRFI+DS ++C GPP+LF LDK+D
Sbjct: 61 ISQSDHSNYPH---DDGVEWHTNLQIDQNMITQGDMPRFILDSYEECRGPPRLFTLDKFD 117
Query: 150 IGGEGACLKRYTDPSFFKTDSACSSMLEQGIQRERRPLRAMEIRPTLQNSEIFRPPNAAN 209
+ G GA LKRY+DPSFFKT+ + S M+E E++P + + + E AN
Sbjct: 118 VAGAGASLKRYSDPSFFKTEHS-SDMIETDAVIEKKPRKIKKKALRWRKGETLESLLIAN 176
Query: 210 NDSKLETDLSGEALDEVPTRRRQLKYR 236
++S T + +VP R +LKYR
Sbjct: 177 SESH--TTSKDRSSRKVPPRTTKLKYR 201
>Os01g0208600 Actin-binding WH2 domain containing protein
Length = 1334
Score = 174 bits (441), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 118/190 (62%), Gaps = 26/190 (13%)
Query: 1 MPLSRHEVGNEYSLGGRELYRRAN-------------------QHDPEAVLDGVAMAGLV 41
MPL R EV NE LG +LY + +P+A+L+GVA+AGLV
Sbjct: 1 MPLVRFEVRNEVGLGDPDLYGGGGGGGGGGGGGGVGAAAKKGGEAEPKALLEGVAVAGLV 60
Query: 42 GVLRQLGDLAEFAAQVFHGLYDEVMTASARGHGLMLRVQQLEAELPLVEK----DSCHTD 97
G+LRQLGDLAEFAA VFH L+++V+T SARG ++ RVQ +EA LP +EK H
Sbjct: 61 GILRQLGDLAEFAADVFHDLHEQVITTSARGRKVLTRVQNIEAALPSLEKAVKNQKSHIH 120
Query: 98 YLYVASNRGIEWHSNPRLESGVVTKGDTPRFIMDSIKKCHGPPKLFMLDKYDIGGEGACL 157
+ YV G +WH+ + E + D PRF+MDS ++C PP+L++LDK+D G GAC
Sbjct: 121 FTYVP---GSDWHAQLKDEQNHLLSSDLPRFMMDSYEECRDPPRLYLLDKFDNAGAGACS 177
Query: 158 KRYTDPSFFK 167
+R++DPS+FK
Sbjct: 178 RRHSDPSYFK 187
>Os03g0817000 Actin-binding WH2 domain containing protein
Length = 443
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 60/88 (68%), Gaps = 6/88 (6%)
Query: 1196 PKYPLFQ-VTAHDRSMLKRAPTLVQPSIKLS-DENNTILEQIKNKSFNLKPV-LAKRPNM 1252
P+ PL V AHDRS +++ LV P+ K +E N +LEQI+NK+FNLKPV AK+P +
Sbjct: 341 PRNPLVDAVAAHDRSTMRKVSELVAPTDKSKPNERNLLLEQIRNKTFNLKPVSSAKQPTI 400
Query: 1253 MGAPRT---NLQVVAILERANAIRQAVA 1277
PR NL+V AI+E+ANAIRQAV
Sbjct: 401 RTPPRASTRNLKVAAIIEKANAIRQAVG 428
>Os07g0691700 Conserved hypothetical protein
Length = 635
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 1182 EEVAKFSPPRVPTPPKYPLFQVTAHDRSMLKRAPTLVQPSIKLSDENNTILEQIKNKSFN 1241
E++ K +PP VP P KY + QV DRS ++ AP L+ PS +LS E + EQI KS +
Sbjct: 527 EQLTKMNPPPVPRP-KYSILQVGVQDRSTVRTAPGLIYPSRRLSGEIRKLPEQINAKSCD 585
Query: 1242 LKPVLAKRPNMMGAPRTNLQVVAILERANAIRQAVA 1277
LKP L + N+ R N +V IL+R + IRQA A
Sbjct: 586 LKPALERGSNVTVDHR-NTKVATILQRVDHIRQAHA 620
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.129 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 43,471,703
Number of extensions: 1884432
Number of successful extensions: 4220
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 4205
Number of HSP's successfully gapped: 6
Length of query: 1287
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1174
Effective length of database: 11,135,619
Effective search space: 13073216706
Effective search space used: 13073216706
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 162 (67.0 bits)