Os03g0298700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0298700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.51 | 0.501 | 7.72 | -0.821 | 0.565 | -1.29 | 1.78 | -1.73 | 0.137 | 14.8 | 24.43 | 884 | -- | -- |
| 115.55 | 0.501 | 7.75 | -1.08 | 0.362 | -1.08 | 1.62 | -- | 0.0719 | 14.6 | 28.5 | 519 | -- | -- |
| 120.03 | 0.51 | 7.72 | -0.664 | 0.213 | -1.11 | -- | -2.02 | 0.141 | 16.4 | 28.38 | 280 | -- | -- |
| 123.73 | 0.518 | 7.75 | -1.03 | 0.366 | -1.06 | -- | -- | 0.0874 | 15.4 | 28.4 | 497 | -- | -- |
| 121.96 | 0.514 | 7.71 | -0.697 | -- | -1.29 | -- | -2.11 | 0.147 | -- | 29 | 269 | -- | -- |
| 134.36 | 0.543 | 7.71 | -0.773 | 0.521 | -- | 1.5 | -- | 0.304 | 15.7 | -- | -- | -- | -- |
| 139.64 | 0.553 | 7.71 | -0.75 | 0.567 | -- | -- | -- | 0.313 | 16.8 | -- | -- | -- | -- |
| 126.84 | 0.525 | 7.76 | -1.07 | -- | -1.29 | -- | -- | 0.0383 | -- | 29.5 | 316 | -- | -- |
| 148.48 | 0.568 | 7.71 | -- | 0.43 | -0.619 | -- | -- | 0.283 | 16.3 | 28.84 | 414 | -- | -- |
| 156.67 | 0.585 | 7.7 | -0.771 | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
| 154.48 | 0.581 | 7.69 | -- | 0.581 | -- | -- | -- | 0.397 | 16.8 | -- | -- | -- | -- |
| 155.23 | 0.58 | 7.72 | -- | -- | -0.933 | -- | -- | 0.226 | -- | 29.63 | 273 | -- | -- |
| 172.37 | 0.613 | 7.68 | -- | -- | -- | -- | -- | 0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.04 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 3 | 106.68 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 10 |
| 6 | 107.06 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 10 | 107.24 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 14 |
| 11 | 107.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 17 |
| 14 | 107.47 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 22 | 107.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 38 | 108.01 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 60 | 108.34 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 7 |
| 135 | 109.20 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 141 | 109.26 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 10 |
| 157 | 109.38 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 180 | 109.59 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 212 | 109.82 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 216 | 109.84 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 252 | 110.14 | wind | 1 | 14400 | < th | dose dependent | rect. | 7 | 5 |
| 255 | 110.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 275 | 110.31 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 303 | 110.56 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 307 | 110.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 352 | 110.85 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 363 | 110.93 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 365 | 110.93 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 369 | 110.95 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 402 | 111.18 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 15 |
| 403 | 111.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 410 | 111.22 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 8 |
| 421 | 111.28 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 10 |
| 428 | 111.32 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 14 |
| 438 | 111.36 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 18 |
| 449 | 111.42 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 21 |
| 458 | 111.47 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 463 | 111.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 465 | 111.49 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 21 |
| 467 | 111.51 | wind | 1 | 14400 | > th | dose independent | sin | 0 | NA |
| 541 | 111.85 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 619 | 112.10 | wind | 1 | 14400 | < th | dose independent | sin | 0 | NA |
| 824 | 113.04 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 847 | 113.13 | wind | 3 | 14400 | < th | dose dependent | sin | 2 | NA |
| 889 | 113.28 | wind | 1 | 14400 | < th | dose dependent | sin | 23 | NA |
| 938 | 113.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 952 | 113.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 5 |