BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0298700 Os03g0298700|Os03g0298700
(1287 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38440.1 | chr2:16095550-16100851 FORWARD LENGTH=1400 251 2e-66
AT5G01730.1 | chr5:273019-277561 REVERSE LENGTH=1171 212 9e-55
AT2G34150.2 | chr2:14419432-14423259 REVERSE LENGTH=822 179 1e-44
AT1G29170.1 | chr1:10190352-10194900 REVERSE LENGTH=1021 175 1e-43
AT4G18600.1 | chr4:10239947-10247372 REVERSE LENGTH=2029 160 4e-39
>AT2G38440.1 | chr2:16095550-16100851 FORWARD LENGTH=1400
Length = 1399
Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/244 (51%), Positives = 167/244 (68%), Gaps = 6/244 (2%)
Query: 1 MPLSRHEVGNEYSLGGRELYRRANQHDPEAVLDGVAMAGLVGVLRQLGDLAEFAAQVFHG 60
MPL+R++ NEY L +LY+ A++ DPEA+L+GVAMAGLVG+LRQLGDLAEFAA++FH
Sbjct: 1 MPLTRYQSRNEYGLADPDLYQAADKDDPEALLEGVAMAGLVGILRQLGDLAEFAAEMFHD 60
Query: 61 LYDEVMTASARGHGLMLRVQQLEAELPLVEKD-SCHTDYLYVASNRGIEWHSNPRLESGV 119
L++EVM ++R HGLM RVQQLEAE P +EK C TD+ SN+G+EWH N +LE V
Sbjct: 61 LHEEVMATASRSHGLMARVQQLEAEFPSIEKALLCQTDHSPFFSNKGVEWHPNLQLEQSV 120
Query: 120 VTKGDTPRFIMDSIKKCHGPPKLFMLDKYDIGGEGACLKRYTDPSFFKTDSACSSMLEQG 179
VT GD PR +MDS ++C GPP+LF+LDK+DI G GACLKRYTDPSF + +++
Sbjct: 121 VTSGDLPRCVMDSYEECRGPPRLFLLDKFDISGAGACLKRYTDPSFVRLETSSYEESWDD 180
Query: 180 IQRERRPLRAMEIRPTLQNSEIFRPPNAANNDSKLETDLSGEALD---EVPTRRRQLKYR 236
IQRE++ +A +N P NA ++ +KL E L+ P R +LK R
Sbjct: 181 IQREKKSQKAKRRASQWRNGGT--PENALSSHAKLHELFLEEHLEAHHSDPARVVKLKTR 238
Query: 237 QLNG 240
+L+G
Sbjct: 239 KLDG 242
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 1190 PRVPTP-PKYPLFQ-VTAHDRSMLKRAPTLVQPSIKLS-DENNTILEQIKNKSFNLKPVL 1246
P V P P+ PL V AHDR +K+ +V P IK D+ +++L QI+NKS NLKP +
Sbjct: 1295 PTVRLPRPRSPLVDAVAAHDRRKMKKVSEMVHPPIKSKQDDKDSLLAQIRNKSVNLKPAV 1354
Query: 1247 AKRPNMMGAPRTNLQVVAILERANAIRQAVA 1277
RP++ PRT+L+V AILE+AN IR A+A
Sbjct: 1355 TTRPSIQTGPRTDLRVAAILEKANTIRMAMA 1385
>AT5G01730.1 | chr5:273019-277561 REVERSE LENGTH=1171
Length = 1170
Score = 212 bits (540), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 165/250 (66%), Gaps = 18/250 (7%)
Query: 1 MPLSRHEVGNEYSLGGRELYRRANQHDPEAVLDGVAMAGLVGVLRQLGDLAEFAAQVFHG 60
M L+R+++ NEY L +ELY+ A++ DPEA+L+ +MAGLVGVLRQLGDL+EFAA+VFH
Sbjct: 1 MALTRYQIRNEYGLADKELYQSADKEDPEALLEAASMAGLVGVLRQLGDLSEFAAEVFHC 60
Query: 61 LYDEVMTASARGHGLMLRVQQLEAELPLVE----KDSCHTDYLYVASNRGIEWHSNPRLE 116
L++++MT +ARGHGL +R+Q LEA+ P VE + H+ + Y G+EWHS+ + +
Sbjct: 61 LHEQLMTTAARGHGLAMRLQHLEADFPSVEIPILSQTDHSTFFY---EPGLEWHSDLQTK 117
Query: 117 SGVVTKGDTPRFIMDSIKKCHGPPKLFMLDKYDIGGEGACLKRYTDPSFFKTDSACSSML 176
+++ + PR IMDS ++CHGPP+LF+LDK+D+ G G+CLKRY+DPS KT + + +
Sbjct: 118 EDLISPRNLPRCIMDSYEECHGPPQLFLLDKFDVAGSGSCLKRYSDPSLLKTHTTSAVVA 177
Query: 177 EQGIQRERRPLRAMEIR---PTLQNSEIFRPPNAANNDSKLETDLSGEALD---EVPTRR 230
+ +++R LR + + T++ + P ++ + +KL E ++ P
Sbjct: 178 TSKLGKDKR-LRQSKKKGSHTTIKET----PEDSRTSHAKLHQLFFLEHVENGHRNPEFH 232
Query: 231 RQLKYRQLNG 240
+LK RQLNG
Sbjct: 233 VKLKRRQLNG 242
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 1203 VTAHDRSMLKRAPTLVQPSIKLS-DENNTILEQIKNKSFNLKPVLAK-RPNM-MGAPRTN 1259
V DRSML++ + + DEN+++LE I++KSFNL+P A RPN + P+TN
Sbjct: 1080 VIGIDRSMLRKVSEGNRTHVGARVDENDSLLEIIRSKSFNLRPADASGRPNFQVAVPKTN 1139
Query: 1260 LQVVAILERANAIRQAVA 1277
L+V AILE+AN +RQA+A
Sbjct: 1140 LKVAAILEKANTLRQAMA 1157
>AT2G34150.2 | chr2:14419432-14423259 REVERSE LENGTH=822
Length = 821
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 128/191 (67%), Gaps = 9/191 (4%)
Query: 1 MPLSRHEVGNEYSLGGRELYRRANQHDPEAVLDGVAMAGLVGVLRQLGDLAEFAAQVFHG 60
MPL R +V N Y LG +EL+ + ++ DP+A+LD VA++GLVG+LRQLGDL EFAA++FHG
Sbjct: 1 MPLVRLQVRNVYGLGQKELHTKVDREDPKAILDDVAVSGLVGILRQLGDLTEFAAEIFHG 60
Query: 61 LYDEVMTASARGHGLMLRVQQLEAELPLVEKDS-CHTDYLYVASNRGIEWHSNPRLES-- 117
+ +EVM ++R + L +R++Q+EA++P ++K T++++ A G+EWH PR+ +
Sbjct: 61 IQEEVMITASRSNKLKMRLKQIEAKVPTIQKTVLAQTNHIHFAYTGGLEWH--PRIPNVQ 118
Query: 118 GVVTKGDTPRFIMDSIKKCHGPPKLFMLDKYDIGGEGACLKRYTDPSFFKTDSACSSMLE 177
+ P FIM + C PP+L +LDK+DI G G+CLKRY+DP+ FK S S E
Sbjct: 119 NHFMYDELPPFIMTPYEDCREPPRLHLLDKFDINGPGSCLKRYSDPTHFKRASRASKPSE 178
Query: 178 ----QGIQRER 184
+ IQR R
Sbjct: 179 IKKKKSIQRGR 189
>AT1G29170.1 | chr1:10190352-10194900 REVERSE LENGTH=1021
Length = 1020
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 4/174 (2%)
Query: 10 NEYSLGGRELYRRANQHDPEAVLDGVAMAGLVGVLRQLGDLAEFAAQVFHGLYDEVMTAS 69
N Y + E+YR ++ DP+A+L+GVA+ GLVGVLRQLGDLAEFAA++FHG+ +EVM +
Sbjct: 4 NVYGMNQSEVYRNVDREDPKAILNGVAVTGLVGVLRQLGDLAEFAAEIFHGIQEEVMATA 63
Query: 70 ARGHGLMLRVQQLEAELPLVEKDS-CHTDYLYVASNRGIEWHSNPRLESGVVTKGDTPRF 128
+R + L +R+Q +EA +P +EK T +++ A G+EWH + + D P
Sbjct: 64 SRSNQLKIRLQHIEATVPPLEKAMLAQTTHIHFAYTGGLEWHPRIPITQNHLIYDDLPHI 123
Query: 129 IMDSIKKCHGPPKLFMLDKYDIGGEGACLKRYTDPSFFKTDSACSSMLEQGIQR 182
IMD ++C GPP+L +LDK+DI G G+CLKRY+DP++F+ SS L QG ++
Sbjct: 124 IMDPYEECRGPPRLHLLDKFDINGPGSCLKRYSDPTYFRR---ASSNLSQGNKK 174
>AT4G18600.1 | chr4:10239947-10247372 REVERSE LENGTH=2029
Length = 2028
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 117/174 (67%), Gaps = 7/174 (4%)
Query: 1 MPLSRHEVGNEYSLGGRELYRRANQHD--PEAVLDGVAMAGLVGVLRQLGDLAEFAAQVF 58
MPL R ++ NE SLGG E+ R A+ D P+A+L V +AGL+G+LRQLGDLAEF+A+VF
Sbjct: 1 MPLVRFKIRNELSLGGPEIQRSASVEDEEPKAILGAVEVAGLIGILRQLGDLAEFSAEVF 60
Query: 59 HGLYDEVMTASARGHGLMLRVQQLEAEL-PLVEKDSCHTDYLYVASNRGIEWHSNPRLES 117
+GL +EV ++R L RV+++E+ L PL + T +++ A G EWH PR+ +
Sbjct: 61 NGLQEEVTVTASRCQKLTSRVRRIESALSPLEKAVLSQTSHIHFAYTAGSEWH--PRIRN 118
Query: 118 GV--VTKGDTPRFIMDSIKKCHGPPKLFMLDKYDIGGEGACLKRYTDPSFFKTD 169
G + D P +M+S ++C PP L +LD++ +GG G+CL++Y+DP+FF+ +
Sbjct: 119 GHSHFVQSDLPLCVMESYEQCRDPPPLHLLDRFAVGGPGSCLRKYSDPTFFRKE 172
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.129 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 27,869,629
Number of extensions: 1225205
Number of successful extensions: 2740
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2731
Number of HSP's successfully gapped: 7
Length of query: 1287
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1177
Effective length of database: 8,090,809
Effective search space: 9522882193
Effective search space used: 9522882193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 118 (50.1 bits)