Os07g0691700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0691700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.84 | 0.51 | 3.37 | -1.52 | 0.112 | -2.43 | -1.32 | 6.02 | 0.0685 | 14.2 | 21.9 | 3922 | -- | -- |
| 127.41 | 0.526 | 3.6 | -1.74 | 0.179 | -4.55 | -1.98 | -- | -0.208 | 13.7 | 18.6 | 10490 | -- | -- |
| 123.93 | 0.518 | 3.36 | -1.49 | 0.139 | -2.43 | -- | 6.24 | 0.0825 | 12.1 | 21.8 | 3906 | -- | -- |
| 132.83 | 0.537 | 3.6 | -1.59 | 0.157 | -4.77 | -- | -- | -0.252 | 12.7 | 18.7 | 9917 | -- | -- |
| 124.94 | 0.521 | 3.37 | -1.51 | -- | -2.43 | -- | 6.18 | 0.0739 | -- | 21.84 | 3905 | -- | -- |
| 406.62 | 0.945 | 3.86 | -4.9 | 0.264 | -- | -1.65 | -- | -1.39 | 13.9 | -- | -- | -- | -- |
| 416.7 | 0.956 | 3.86 | -4.95 | 0.274 | -- | -- | -- | -1.4 | 12.4 | -- | -- | -- | -- |
| 134.8 | 0.541 | 3.6 | -1.57 | -- | -4.78 | -- | -- | -0.226 | -- | 18.72 | 9910 | -- | -- |
| 147.3 | 0.565 | 3.51 | -- | 0.131 | -5.24 | -- | -- | 0.211 | 12.9 | 18.1 | 24010 | -- | -- |
| 421.42 | 0.959 | 3.87 | -4.96 | -- | -- | -- | -- | -1.41 | -- | -- | -- | -- | -- |
| 1062.07 | 1.52 | 3.74 | -- | 0.353 | -- | -- | -- | -0.853 | 13.2 | -- | -- | -- | -- |
| 148.76 | 0.568 | 3.52 | -- | -- | -5.16 | -- | -- | 0.159 | -- | 18.01 | 23995 | -- | -- |
| 1069.78 | 1.53 | 3.75 | -- | -- | -- | -- | -- | -0.858 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.55 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 4 | 110.75 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 5 | 110.79 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 107 | 113.01 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 124 | 113.20 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 126 | 113.21 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 14 | NA |
| 149 | 113.42 | temperature | 15 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 209 | 113.97 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 245 | 114.23 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 414 | 115.16 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 17 | NA |
| 533 | 115.64 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 18 | NA |
| 649 | 115.97 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 699 | 116.13 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 709 | 116.17 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 798 | 116.55 | temperature | 15 | 43200 | > th | dose independent | sin | 11 | NA |
| 832 | 116.70 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 871 | 116.87 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 982 | 117.28 | temperature | 15 | 43200 | < th | dose independent | sin | 11 | NA |
| 983 | 117.28 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 14 |