BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0691700 Os07g0691700|J065162K07
         (635 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0691700  Conserved hypothetical protein                     1286   0.0  
Os03g0298700  Conserved hypothetical protein                       71   2e-12

>Os07g0691700 Conserved hypothetical protein
          Length = 635

 Score = 1286 bits (3327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/635 (97%), Positives = 620/635 (97%)

Query: 1   MDASHGFLSMFRQLKYRQTNGSPMPQMHNFQXXXXXXXXXXXXXXXPESSIKVTQDIGAS 60
           MDASHGFLSMFRQLKYRQTNGSPMPQMHNFQ               PESSIKVTQDIGAS
Sbjct: 1   MDASHGFLSMFRQLKYRQTNGSPMPQMHNFQNETSSSELNISSNCSPESSIKVTQDIGAS 60

Query: 61  TTGTDSVSEERNLELERTSSFEAWLSPNAHNIQHDQIAEEMPHYSCNNNNGFVNHVTPND 120
           TTGTDSVSEERNLELERTSSFEAWLSPNAHNIQHDQIAEEMPHYSCNNNNGFVNHVTPND
Sbjct: 61  TTGTDSVSEERNLELERTSSFEAWLSPNAHNIQHDQIAEEMPHYSCNNNNGFVNHVTPND 120

Query: 121 AIGATNNGNCKDDSNTYKKAVRSKYRGGMEFIASRVSSFPRKLFRKKQDPHPLSVADSFR 180
           AIGATNNGNCKDDSNTYKKAVRSKYRGGMEFIASRVSSFPRKLFRKKQDPHPLSVADSFR
Sbjct: 121 AIGATNNGNCKDDSNTYKKAVRSKYRGGMEFIASRVSSFPRKLFRKKQDPHPLSVADSFR 180

Query: 181 NMTSKILELKCNNIRDNDSNGMGSINREELLASENGEHPSPDAPFRHVSTERRYMHATRA 240
           NMTSKILELKCNNIRDNDSNGMGSINREELLASENGEHPSPDAPFRHVSTERRYMHATRA
Sbjct: 181 NMTSKILELKCNNIRDNDSNGMGSINREELLASENGEHPSPDAPFRHVSTERRYMHATRA 240

Query: 241 SSEDVPALAEVASDKKSKQEHSDDASEASYDKLLDEELHQSVVRQERNGSPVPQVCSTTR 300
           SSEDVPALAEVASDKKSKQEHSDDASEASYDKLLDEELHQSVVRQERNGSPVPQVCSTTR
Sbjct: 241 SSEDVPALAEVASDKKSKQEHSDDASEASYDKLLDEELHQSVVRQERNGSPVPQVCSTTR 300

Query: 301 FSQLEREGPGKDMVPPLPPMQWLSSIKVHSGSRVASSPRLKTLRPQSPAVPNHAAGRSYS 360
           FSQLEREGPGKDMVPPLPPMQWLSSIKVHSGSRVASSPRLKTLRPQSPAVPNHAAGRSYS
Sbjct: 301 FSQLEREGPGKDMVPPLPPMQWLSSIKVHSGSRVASSPRLKTLRPQSPAVPNHAAGRSYS 360

Query: 361 HPVRKQLETDNVQARGHFGILASHAEIAQTSASDIKSAAVISIRNGICRYGFPGKDSEEI 420
           HPVRKQLETDNVQARGHFGILASHAEIAQTSASDIKSAAVISIRNGICRYGFPGKDSEEI
Sbjct: 361 HPVRKQLETDNVQARGHFGILASHAEIAQTSASDIKSAAVISIRNGICRYGFPGKDSEEI 420

Query: 421 NHQEKDIIQPSEGEILKTTEEVCEPTVQSDESPPEQHSEIQPQREEIHQTGNGDSDCNNK 480
           NHQEKDIIQPSEGEILKTTEEVCEPTVQSDESPPEQHSEIQPQREEIHQTGNGDSDCNNK
Sbjct: 421 NHQEKDIIQPSEGEILKTTEEVCEPTVQSDESPPEQHSEIQPQREEIHQTGNGDSDCNNK 480

Query: 481 NNLRATTEGPIYSNGPQIDVHNSLDHPTDRESNTNVHVESVFFSAVEQLTKMNPPPVPRP 540
           NNLRATTEGPIYSNGPQIDVHNSLDHPTDRESNTNVHVESVFFSAVEQLTKMNPPPVPRP
Sbjct: 481 NNLRATTEGPIYSNGPQIDVHNSLDHPTDRESNTNVHVESVFFSAVEQLTKMNPPPVPRP 540

Query: 541 KYSILQVGVQDRSTVRTAPGLIYPSRRLSGEIRKLPEQINAKSCDLKPALERGSNVTVDH 600
           KYSILQVGVQDRSTVRTAPGLIYPSRRLSGEIRKLPEQINAKSCDLKPALERGSNVTVDH
Sbjct: 541 KYSILQVGVQDRSTVRTAPGLIYPSRRLSGEIRKLPEQINAKSCDLKPALERGSNVTVDH 600

Query: 601 RNTKVATILQRVDHIRQAHAENYDIDSEVSWSDSD 635
           RNTKVATILQRVDHIRQAHAENYDIDSEVSWSDSD
Sbjct: 601 RNTKVATILQRVDHIRQAHAENYDIDSEVSWSDSD 635



>Os03g0298700 Conserved hypothetical protein
          Length = 1287

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 529  LTKMNPPPVPRP-KYSILQVGVQDRSTVRTAPGLIYPSRRLSGEIRKLPEQINAKSCDLK 587
            + K +PP VP P KY + QV   DRS ++ AP L+ PS +LS E   + EQI  KS +LK
Sbjct: 1184 VAKFSPPRVPTPPKYPLFQVTAHDRSMLKRAPTLVQPSIKLSDENNTILEQIKNKSFNLK 1243

Query: 588  PALERGSNVTVDHR-NTKVATILQRVDHIRQAHA 620
            P L +  N+    R N +V  IL+R + IRQA A
Sbjct: 1244 PVLAKRPNMMGAPRTNLQVVAILERANAIRQAVA 1277




 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 71/147 (48%), Gaps = 34/147 (23%)

Query: 74  ELERTSSFEAWL----SPNAHNIQHDQIAEEMPHYSCNNNNGFVNHVTPNDAIGATNNGN 129
           E ERTSS E  L     P+ HN++             +N NG V+ V  N  +G T    
Sbjct: 449 EHERTSSLEELLLGDVHPSGHNMRSSATE--------SNTNGVVSTVESNGTVGTTK--- 497

Query: 130 CKDDSN------TYKKAV--RSKYRGGMEFIASRVSSFPRKLFRKKQDPHPLSVADSFRN 181
            K+  N      ++KK    +SKY G ME I S+V   PRKL  KK DP     +DS RN
Sbjct: 498 -KEKDNPIIAGISFKKTASKKSKYVGSMELIVSKVGILPRKL-SKKHDP----FSDSLRN 551

Query: 182 MTSKILELKCNNIRDN-----DSNGMG 203
           M  ++LELK +  +D      ++NG G
Sbjct: 552 MAKQLLELKIDGTKDTELYEFEANGEG 578



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,178,752
Number of extensions: 1044058
Number of successful extensions: 2790
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2786
Number of HSP's successfully gapped: 3
Length of query: 635
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 528
Effective length of database: 11,448,903
Effective search space: 6045020784
Effective search space used: 6045020784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)