BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0297000 Os03g0297000|AK101359
         (170 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0297000  Protein of unknown function DUF538 family protein   348   7e-97
Os05g0346400  Protein of unknown function DUF538 family protein   253   3e-68
Os01g0565800  Protein of unknown function DUF538 family protein   253   6e-68
Os03g0210500  Protein of unknown function DUF538 family protein    75   2e-14

>Os03g0297000 Protein of unknown function DUF538 family protein
          Length = 170

 Score =  348 bits (894), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MDDIMNKLGGYWLGQKANKEISSAGDDIESLSTSVGEGAKWLVNKLKGKMQKPLQELLRE 60
           MDDIMNKLGGYWLGQKANKEISSAGDDIESLSTSVGEGAKWLVNKLKGKMQKPLQELLRE
Sbjct: 1   MDDIMNKLGGYWLGQKANKEISSAGDDIESLSTSVGEGAKWLVNKLKGKMQKPLQELLRE 60

Query: 61  HDLPEGLFPREATNYEFSPETRRLTVHIPAACEVGYRDGSVLRFDATVCGTLEKGRLAEV 120
           HDLPEGLFPREATNYEFSPETRRLTVHIPAACEVGYRDGSVLRFDATVCGTLEKGRLAEV
Sbjct: 61  HDLPEGLFPREATNYEFSPETRRLTVHIPAACEVGYRDGSVLRFDATVCGTLEKGRLAEV 120

Query: 121 EGLKTKVLVWARVTAVRADAAKVHFTAGIRKSRSRDAYEVVRGGIIVEEF 170
           EGLKTKVLVWARVTAVRADAAKVHFTAGIRKSRSRDAYEVVRGGIIVEEF
Sbjct: 121 EGLKTKVLVWARVTAVRADAAKVHFTAGIRKSRSRDAYEVVRGGIIVEEF 170



>Os05g0346400 Protein of unknown function DUF538 family protein
          Length = 170

 Score =  253 bits (647), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 110/170 (64%), Positives = 147/170 (86%)

Query: 1   MDDIMNKLGGYWLGQKANKEISSAGDDIESLSTSVGEGAKWLVNKLKGKMQKPLQELLRE 60
           MD ++NK+G YW  ++A+KEI S GDDI S+STS+G GAKW+VNK+KGKMQK L +LL+E
Sbjct: 1   MDQVLNKVGSYWFSKRASKEIDSIGDDISSISTSIGTGAKWMVNKIKGKMQKALPDLLKE 60

Query: 61  HDLPEGLFPREATNYEFSPETRRLTVHIPAACEVGYRDGSVLRFDATVCGTLEKGRLAEV 120
           +D+P GLFPR+ATNYEF+ ET++LTV+IP+AC+VGY+D SVLRF   V G LEKG+L+++
Sbjct: 61  YDMPAGLFPRDATNYEFNEETKKLTVYIPSACDVGYKDSSVLRFFTCVTGYLEKGKLSDI 120

Query: 121 EGLKTKVLVWARVTAVRADAAKVHFTAGIRKSRSRDAYEVVRGGIIVEEF 170
           EGLKTKVLVW +VTA++ + +KVHFTAG++K+RSRDAYEVVR GI +++F
Sbjct: 121 EGLKTKVLVWTKVTAIKTEGSKVHFTAGVKKTRSRDAYEVVRDGIPIDKF 170



>Os01g0565800 Protein of unknown function DUF538 family protein
          Length = 170

 Score =  253 bits (645), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 144/170 (84%)

Query: 1   MDDIMNKLGGYWLGQKANKEISSAGDDIESLSTSVGEGAKWLVNKLKGKMQKPLQELLRE 60
           MD IM K+GGYW  Q A KEI++ GDDI S+S+S+G+GAKW+VNK+KGKMQKPL E L+E
Sbjct: 1   MDQIMGKVGGYWFKQNAGKEINNIGDDINSISSSIGDGAKWMVNKIKGKMQKPLPEFLKE 60

Query: 61  HDLPEGLFPREATNYEFSPETRRLTVHIPAACEVGYRDGSVLRFDATVCGTLEKGRLAEV 120
           +DLP GLFP++ATNYEF+ ET++LTV+I +ACEVGY+D SVLRF  TV G LEKG+L+EV
Sbjct: 61  YDLPVGLFPQDATNYEFNEETKKLTVYISSACEVGYKDSSVLRFSTTVTGYLEKGKLSEV 120

Query: 121 EGLKTKVLVWARVTAVRADAAKVHFTAGIRKSRSRDAYEVVRGGIIVEEF 170
           EGLKTK+L+W +V AVR +A KVHF AG+ K+R+RDAYEVVR G+ +++F
Sbjct: 121 EGLKTKILIWTKVMAVRTEATKVHFAAGMNKARNRDAYEVVRDGVGIDKF 170



>Os03g0210500 Protein of unknown function DUF538 family protein
          Length = 101

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 67/99 (67%), Gaps = 3/99 (3%)

Query: 75  YEFSPETRRLTVHIPAACEVGYRDGSVLRFDATVCGTLEKGRLAEVEGLKTKVLVWARVT 134
           YE+   + +L VH+   CEV ++D SV+R+   V  TL +G+L+ +EG+KTKV+VW +V 
Sbjct: 3   YEYDQTSSKLVVHLSKPCEVSFKDSSVIRYAPRVKVTLSRGKLSAIEGMKTKVVVWVKVA 62

Query: 135 AVRADAA---KVHFTAGIRKSRSRDAYEVVRGGIIVEEF 170
           ++  ++    K+ F AG++K R +DAYEV R GI VEEF
Sbjct: 63  SISLESFRSDKICFIAGVKKLRQKDAYEVPREGIAVEEF 101



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,642,988
Number of extensions: 216874
Number of successful extensions: 576
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 4
Length of query: 170
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 76
Effective length of database: 12,127,685
Effective search space: 921704060
Effective search space used: 921704060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)